Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
HMGN4O00479 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HMGN4O00479 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC17.44■□□□□ 0.38
HMGN4O00479 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
HMGN4O00479 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HMGN4O00479 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HMGN4O00479 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC17.43■□□□□ 0.38
HMGN4O00479 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC17.43■□□□□ 0.38
HMGN4O00479 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
HMGN4O00479 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HMGN4O00479 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
HMGN4O00479 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
HMGN4O00479 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
HMGN4O00479 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC17.43■□□□□ 0.38
HMGN4O00479 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
HMGN4O00479 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC17.43■□□□□ 0.38
HMGN4O00479 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC17.43■□□□□ 0.38
HMGN4O00479 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC17.43■□□□□ 0.38
HMGN4O00479 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC17.43■□□□□ 0.38
HMGN4O00479 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC17.43■□□□□ 0.38
HMGN4O00479 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC17.43■□□□□ 0.38
HMGN4O00479 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC17.43■□□□□ 0.38
HMGN4O00479 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
HMGN4O00479 KRT8P45-201ENST00000414328 1447 ntBASIC17.43■□□□□ 0.38
HMGN4O00479 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HMGN4O00479 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HMGN4O00479 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC17.43■□□□□ 0.38
HMGN4O00479 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
HMGN4O00479 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
HMGN4O00479 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC17.43■□□□□ 0.38
HMGN4O00479 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HMGN4O00479 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
HMGN4O00479 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC17.42■□□□□ 0.38
HMGN4O00479 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC17.42■□□□□ 0.38
HMGN4O00479 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
HMGN4O00479 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HMGN4O00479 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
HMGN4O00479 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC17.42■□□□□ 0.38
HMGN4O00479 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
HMGN4O00479 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
HMGN4O00479 AC112777.1-201ENST00000540175 1423 ntBASIC17.42■□□□□ 0.38
HMGN4O00479 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
HMGN4O00479 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
HMGN4O00479 GRAP-204ENST00000573099 846 ntTSL 3 BASIC17.42■□□□□ 0.38
HMGN4O00479 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC17.42■□□□□ 0.38
HMGN4O00479 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC17.42■□□□□ 0.38
HMGN4O00479 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
HMGN4O00479 MYC-208ENST00000641036 567 ntBASIC17.42■□□□□ 0.38
HMGN4O00479 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HMGN4O00479 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC17.42■□□□□ 0.38
HMGN4O00479 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
HMGN4O00479 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HMGN4O00479 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC17.42■□□□□ 0.38
HMGN4O00479 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
HMGN4O00479 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HMGN4O00479 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
HMGN4O00479 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC17.42■□□□□ 0.38
HMGN4O00479 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HMGN4O00479 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC17.42■□□□□ 0.38
HMGN4O00479 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
HMGN4O00479 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HMGN4O00479 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC17.42■□□□□ 0.38
HMGN4O00479 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HMGN4O00479 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HMGN4O00479 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HMGN4O00479 AC096733.2-201ENST00000609937 1394 ntBASIC17.41■□□□□ 0.38
HMGN4O00479 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HMGN4O00479 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC17.41■□□□□ 0.38
HMGN4O00479 ABALON-201ENST00000629058 1903 ntBASIC17.41■□□□□ 0.38
HMGN4O00479 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC17.41■□□□□ 0.38
HMGN4O00479 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC17.41■□□□□ 0.38
HMGN4O00479 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HMGN4O00479 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
HMGN4O00479 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC17.41■□□□□ 0.38
HMGN4O00479 TBC1D3P2-202ENST00000577902 1649 ntBASIC17.41■□□□□ 0.38
HMGN4O00479 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC17.41■□□□□ 0.38
HMGN4O00479 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
HMGN4O00479 AC116562.2-201ENST00000507042 360 ntBASIC17.41■□□□□ 0.38
HMGN4O00479 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC17.41■□□□□ 0.38
HMGN4O00479 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC17.41■□□□□ 0.38
HMGN4O00479 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC17.41■□□□□ 0.38
HMGN4O00479 AC008622.2-201ENST00000617006 1229 ntBASIC17.41■□□□□ 0.38
HMGN4O00479 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC17.41■□□□□ 0.38
HMGN4O00479 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
HMGN4O00479 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HMGN4O00479 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
HMGN4O00479 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
HMGN4O00479 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
HMGN4O00479 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
HMGN4O00479 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HMGN4O00479 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
HMGN4O00479 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HMGN4O00479 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
HMGN4O00479 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HMGN4O00479 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HMGN4O00479 AL109659.2-201ENST00000606809 1674 ntBASIC17.4■□□□□ 0.38
HMGN4O00479 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC17.4■□□□□ 0.38
HMGN4O00479 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
HMGN4O00479 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
HMGN4O00479 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms