Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
TRIM49D1C9J1S8 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC18.79■□□□□ 0.6
TRIM49D1C9J1S8 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
TRIM49D1C9J1S8 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
TRIM49D1C9J1S8 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TRIM49D1C9J1S8 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
TRIM49D1C9J1S8 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TRIM49D1C9J1S8 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC18.79■□□□□ 0.6
TRIM49D1C9J1S8 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
TRIM49D1C9J1S8 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TRIM49D1C9J1S8 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC18.78■□□□□ 0.6
TRIM49D1C9J1S8 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TRIM49D1C9J1S8 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
TRIM49D1C9J1S8 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
TRIM49D1C9J1S8 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
TRIM49D1C9J1S8 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
TRIM49D1C9J1S8 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
TRIM49D1C9J1S8 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TRIM49D1C9J1S8 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
TRIM49D1C9J1S8 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC18.78■□□□□ 0.6
TRIM49D1C9J1S8 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
TRIM49D1C9J1S8 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TRIM49D1C9J1S8 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC18.78■□□□□ 0.6
TRIM49D1C9J1S8 AL109923.1-201ENST00000618799 583 ntBASIC18.78■□□□□ 0.6
TRIM49D1C9J1S8 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TRIM49D1C9J1S8 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
TRIM49D1C9J1S8 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC18.78■□□□□ 0.6
TRIM49D1C9J1S8 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
TRIM49D1C9J1S8 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
TRIM49D1C9J1S8 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TRIM49D1C9J1S8 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
TRIM49D1C9J1S8 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
TRIM49D1C9J1S8 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
TRIM49D1C9J1S8 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
TRIM49D1C9J1S8 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
TRIM49D1C9J1S8 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC18.78■□□□□ 0.6
TRIM49D1C9J1S8 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
TRIM49D1C9J1S8 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
TRIM49D1C9J1S8 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
TRIM49D1C9J1S8 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
TRIM49D1C9J1S8 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC18.77■□□□□ 0.6
TRIM49D1C9J1S8 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC18.77■□□□□ 0.6
TRIM49D1C9J1S8 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
TRIM49D1C9J1S8 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
TRIM49D1C9J1S8 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
TRIM49D1C9J1S8 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
TRIM49D1C9J1S8 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
TRIM49D1C9J1S8 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
TRIM49D1C9J1S8 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC18.77■□□□□ 0.6
TRIM49D1C9J1S8 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
TRIM49D1C9J1S8 Z85996.1-201ENST00000494644 937 ntBASIC18.77■□□□□ 0.6
TRIM49D1C9J1S8 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC18.77■□□□□ 0.6
TRIM49D1C9J1S8 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
TRIM49D1C9J1S8 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
TRIM49D1C9J1S8 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
TRIM49D1C9J1S8 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC18.77■□□□□ 0.6
TRIM49D1C9J1S8 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC18.77■□□□□ 0.6
TRIM49D1C9J1S8 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC18.77■□□□□ 0.59
TRIM49D1C9J1S8 AC008764.6-201ENST00000595909 2069 ntBASIC18.77■□□□□ 0.59
TRIM49D1C9J1S8 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
TRIM49D1C9J1S8 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
TRIM49D1C9J1S8 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
TRIM49D1C9J1S8 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
TRIM49D1C9J1S8 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
TRIM49D1C9J1S8 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC18.76■□□□□ 0.59
TRIM49D1C9J1S8 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC18.76■□□□□ 0.59
TRIM49D1C9J1S8 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
TRIM49D1C9J1S8 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
TRIM49D1C9J1S8 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
TRIM49D1C9J1S8 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
TRIM49D1C9J1S8 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC18.76■□□□□ 0.59
TRIM49D1C9J1S8 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC18.76■□□□□ 0.59
TRIM49D1C9J1S8 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC18.76■□□□□ 0.59
TRIM49D1C9J1S8 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
TRIM49D1C9J1S8 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC18.76■□□□□ 0.59
TRIM49D1C9J1S8 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC18.76■□□□□ 0.59
TRIM49D1C9J1S8 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC18.76■□□□□ 0.59
TRIM49D1C9J1S8 MIR935-201ENST00000401179 91 ntBASIC18.76■□□□□ 0.59
TRIM49D1C9J1S8 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC18.76■□□□□ 0.59
TRIM49D1C9J1S8 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
TRIM49D1C9J1S8 POU5F1P3-201ENST00000428824 1078 ntBASIC18.76■□□□□ 0.59
TRIM49D1C9J1S8 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC18.76■□□□□ 0.59
TRIM49D1C9J1S8 UNC93B5-201ENST00000530315 699 ntBASIC18.76■□□□□ 0.59
TRIM49D1C9J1S8 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC18.76■□□□□ 0.59
TRIM49D1C9J1S8 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
TRIM49D1C9J1S8 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC18.76■□□□□ 0.59
TRIM49D1C9J1S8 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
TRIM49D1C9J1S8 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
TRIM49D1C9J1S8 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
TRIM49D1C9J1S8 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
TRIM49D1C9J1S8 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
TRIM49D1C9J1S8 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
TRIM49D1C9J1S8 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
TRIM49D1C9J1S8 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
TRIM49D1C9J1S8 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
TRIM49D1C9J1S8 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
TRIM49D1C9J1S8 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
TRIM49D1C9J1S8 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
TRIM49D1C9J1S8 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
TRIM49D1C9J1S8 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC18.75■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 55.2 ms