Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
TRIM39Q9HCM9 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
TRIM39Q9HCM9 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
TRIM39Q9HCM9 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
TRIM39Q9HCM9 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
TRIM39Q9HCM9 AL109659.2-201ENST00000606809 1674 ntBASIC18.57■□□□□ 0.56
TRIM39Q9HCM9 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
TRIM39Q9HCM9 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
TRIM39Q9HCM9 AL049812.1-201ENST00000432563 2267 ntBASIC18.57■□□□□ 0.56
TRIM39Q9HCM9 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
TRIM39Q9HCM9 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
TRIM39Q9HCM9 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
TRIM39Q9HCM9 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
TRIM39Q9HCM9 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
TRIM39Q9HCM9 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
TRIM39Q9HCM9 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
TRIM39Q9HCM9 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC18.57■□□□□ 0.56
TRIM39Q9HCM9 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
TRIM39Q9HCM9 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
TRIM39Q9HCM9 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
TRIM39Q9HCM9 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC18.57■□□□□ 0.56
TRIM39Q9HCM9 CR769767.2-201ENST00000622735 460 ntBASIC18.57■□□□□ 0.56
TRIM39Q9HCM9 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC18.57■□□□□ 0.56
TRIM39Q9HCM9 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
TRIM39Q9HCM9 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
TRIM39Q9HCM9 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
TRIM39Q9HCM9 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC18.56■□□□□ 0.56
TRIM39Q9HCM9 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC18.56■□□□□ 0.56
TRIM39Q9HCM9 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TRIM39Q9HCM9 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC18.56■□□□□ 0.56
TRIM39Q9HCM9 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
TRIM39Q9HCM9 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TRIM39Q9HCM9 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TRIM39Q9HCM9 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TRIM39Q9HCM9 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
TRIM39Q9HCM9 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TRIM39Q9HCM9 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
TRIM39Q9HCM9 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TRIM39Q9HCM9 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
TRIM39Q9HCM9 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC18.56■□□□□ 0.56
TRIM39Q9HCM9 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TRIM39Q9HCM9 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC18.56■□□□□ 0.56
TRIM39Q9HCM9 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
TRIM39Q9HCM9 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
TRIM39Q9HCM9 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TRIM39Q9HCM9 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC18.56■□□□□ 0.56
TRIM39Q9HCM9 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TRIM39Q9HCM9 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
TRIM39Q9HCM9 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
TRIM39Q9HCM9 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
TRIM39Q9HCM9 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
TRIM39Q9HCM9 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
TRIM39Q9HCM9 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC18.55■□□□□ 0.56
TRIM39Q9HCM9 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC18.55■□□□□ 0.56
TRIM39Q9HCM9 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TRIM39Q9HCM9 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TRIM39Q9HCM9 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC18.55■□□□□ 0.56
TRIM39Q9HCM9 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
TRIM39Q9HCM9 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TRIM39Q9HCM9 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC18.55■□□□□ 0.56
TRIM39Q9HCM9 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC18.55■□□□□ 0.56
TRIM39Q9HCM9 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC18.55■□□□□ 0.56
TRIM39Q9HCM9 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC18.55■□□□□ 0.56
TRIM39Q9HCM9 MIR3180-5-201ENST00000583743 153 ntBASIC18.55■□□□□ 0.56
TRIM39Q9HCM9 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
TRIM39Q9HCM9 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
TRIM39Q9HCM9 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
TRIM39Q9HCM9 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TRIM39Q9HCM9 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC18.55■□□□□ 0.56
TRIM39Q9HCM9 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
TRIM39Q9HCM9 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TRIM39Q9HCM9 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC18.55■□□□□ 0.56
TRIM39Q9HCM9 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TRIM39Q9HCM9 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
TRIM39Q9HCM9 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TRIM39Q9HCM9 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC18.54■□□□□ 0.56
TRIM39Q9HCM9 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
TRIM39Q9HCM9 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
TRIM39Q9HCM9 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TRIM39Q9HCM9 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
TRIM39Q9HCM9 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TRIM39Q9HCM9 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
TRIM39Q9HCM9 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TRIM39Q9HCM9 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TRIM39Q9HCM9 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC18.54■□□□□ 0.56
TRIM39Q9HCM9 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC18.54■□□□□ 0.56
TRIM39Q9HCM9 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TRIM39Q9HCM9 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TRIM39Q9HCM9 ILF2-202ENST00000368681 726 ntTSL 2 BASIC18.54■□□□□ 0.56
TRIM39Q9HCM9 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC18.54■□□□□ 0.56
TRIM39Q9HCM9 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TRIM39Q9HCM9 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC18.54■□□□□ 0.56
TRIM39Q9HCM9 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
TRIM39Q9HCM9 AC068587.9-201ENST00000641814 219 ntBASIC18.54■□□□□ 0.56
TRIM39Q9HCM9 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
TRIM39Q9HCM9 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TRIM39Q9HCM9 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
TRIM39Q9HCM9 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TRIM39Q9HCM9 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TRIM39Q9HCM9 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC18.54■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms