Protein–RNA interactions for Protein: Q99742

NPAS1, Neuronal PAS domain-containing protein 1, humanhuman

Predictions only

Length 590 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS1Q99742 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
NPAS1Q99742 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC17.07■□□□□ 0.32
NPAS1Q99742 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
NPAS1Q99742 TMA16-209ENST00000513272 803 ntTSL 2 BASIC17.07■□□□□ 0.32
NPAS1Q99742 AC145285.6-201ENST00000604632 637 ntBASIC17.07■□□□□ 0.32
NPAS1Q99742 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
NPAS1Q99742 AC097493.4-201ENST00000641197 219 ntBASIC17.07■□□□□ 0.32
NPAS1Q99742 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC17.07■□□□□ 0.32
NPAS1Q99742 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
NPAS1Q99742 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
NPAS1Q99742 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
NPAS1Q99742 TNXA-203ENST00000507684 2038 ntBASIC17.07■□□□□ 0.32
NPAS1Q99742 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
NPAS1Q99742 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
NPAS1Q99742 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC17.07■□□□□ 0.32
NPAS1Q99742 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC17.07■□□□□ 0.32
NPAS1Q99742 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
NPAS1Q99742 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
NPAS1Q99742 AC093503.3-201ENST00000624917 2352 ntBASIC17.07■□□□□ 0.32
NPAS1Q99742 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
NPAS1Q99742 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
NPAS1Q99742 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
NPAS1Q99742 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
NPAS1Q99742 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC17.06■□□□□ 0.32
NPAS1Q99742 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
NPAS1Q99742 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
NPAS1Q99742 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
NPAS1Q99742 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
NPAS1Q99742 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC17.06■□□□□ 0.32
NPAS1Q99742 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
NPAS1Q99742 CROCCP3-202ENST00000420820 1947 ntBASIC17.06■□□□□ 0.32
NPAS1Q99742 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
NPAS1Q99742 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
NPAS1Q99742 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
NPAS1Q99742 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC17.06■□□□□ 0.32
NPAS1Q99742 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
NPAS1Q99742 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
NPAS1Q99742 AL023284.2-201ENST00000405850 579 ntBASIC17.06■□□□□ 0.32
NPAS1Q99742 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC17.06■□□□□ 0.32
NPAS1Q99742 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC17.06■□□□□ 0.32
NPAS1Q99742 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
NPAS1Q99742 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
NPAS1Q99742 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC17.06■□□□□ 0.32
NPAS1Q99742 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC17.06■□□□□ 0.32
NPAS1Q99742 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
NPAS1Q99742 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
NPAS1Q99742 RCC2P3-201ENST00000418112 1537 ntBASIC17.06■□□□□ 0.32
NPAS1Q99742 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC17.06■□□□□ 0.32
NPAS1Q99742 KRT8P32-201ENST00000512863 1461 ntBASIC17.05■□□□□ 0.32
NPAS1Q99742 NEFHP1-201ENST00000412845 2629 ntBASIC17.05■□□□□ 0.32
NPAS1Q99742 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
NPAS1Q99742 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
NPAS1Q99742 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
NPAS1Q99742 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC17.05■□□□□ 0.32
NPAS1Q99742 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
NPAS1Q99742 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC17.05■□□□□ 0.32
NPAS1Q99742 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC17.05■□□□□ 0.32
NPAS1Q99742 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
NPAS1Q99742 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC17.05■□□□□ 0.32
NPAS1Q99742 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC17.05■□□□□ 0.32
NPAS1Q99742 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
NPAS1Q99742 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC17.05■□□□□ 0.32
NPAS1Q99742 AC116562.4-202ENST00000641738 218 ntBASIC17.05■□□□□ 0.32
NPAS1Q99742 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
NPAS1Q99742 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
NPAS1Q99742 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
NPAS1Q99742 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
NPAS1Q99742 AC008556.1-201ENST00000610908 2040 ntBASIC17.04■□□□□ 0.32
NPAS1Q99742 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC17.04■□□□□ 0.32
NPAS1Q99742 AR-207ENST00000612010 3896 ntTSL 5 BASIC17.04■□□□□ 0.32
NPAS1Q99742 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
NPAS1Q99742 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
NPAS1Q99742 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC17.04■□□□□ 0.32
NPAS1Q99742 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
NPAS1Q99742 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
NPAS1Q99742 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
NPAS1Q99742 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC17.04■□□□□ 0.32
NPAS1Q99742 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
NPAS1Q99742 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
NPAS1Q99742 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC17.04■□□□□ 0.32
NPAS1Q99742 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
NPAS1Q99742 CCR12P-201ENST00000446203 998 ntBASIC17.04■□□□□ 0.32
NPAS1Q99742 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
NPAS1Q99742 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC17.04■□□□□ 0.32
NPAS1Q99742 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC17.04■□□□□ 0.32
NPAS1Q99742 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
NPAS1Q99742 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC17.04■□□□□ 0.32
NPAS1Q99742 AC068587.9-201ENST00000641814 219 ntBASIC17.04■□□□□ 0.32
NPAS1Q99742 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
NPAS1Q99742 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
NPAS1Q99742 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
NPAS1Q99742 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
NPAS1Q99742 KRT8P45-201ENST00000414328 1447 ntBASIC17.04■□□□□ 0.32
NPAS1Q99742 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
NPAS1Q99742 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
NPAS1Q99742 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
NPAS1Q99742 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
NPAS1Q99742 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC17.03■□□□□ 0.32
NPAS1Q99742 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
NPAS1Q99742 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms