Protein–RNA interactions for Protein: Q99727

TIMP4, Metalloproteinase inhibitor 4, humanhuman

Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP4Q99727 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC17.2■□□□□ 0.34
TIMP4Q99727 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC17.2■□□□□ 0.34
TIMP4Q99727 LGALS8-AS1-201ENST00000487567 1457 ntBASIC17.2■□□□□ 0.34
TIMP4Q99727 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC17.2■□□□□ 0.34
TIMP4Q99727 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TIMP4Q99727 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
TIMP4Q99727 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC17.2■□□□□ 0.34
TIMP4Q99727 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
TIMP4Q99727 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC17.2■□□□□ 0.34
TIMP4Q99727 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
TIMP4Q99727 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
TIMP4Q99727 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC17.2■□□□□ 0.34
TIMP4Q99727 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC17.2■□□□□ 0.34
TIMP4Q99727 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC17.2■□□□□ 0.34
TIMP4Q99727 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
TIMP4Q99727 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
TIMP4Q99727 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC17.2■□□□□ 0.34
TIMP4Q99727 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
TIMP4Q99727 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
TIMP4Q99727 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
TIMP4Q99727 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC17.2■□□□□ 0.34
TIMP4Q99727 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC17.2■□□□□ 0.34
TIMP4Q99727 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TIMP4Q99727 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TIMP4Q99727 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TIMP4Q99727 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TIMP4Q99727 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TIMP4Q99727 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
TIMP4Q99727 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TIMP4Q99727 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC17.19■□□□□ 0.34
TIMP4Q99727 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
TIMP4Q99727 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
TIMP4Q99727 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TIMP4Q99727 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TIMP4Q99727 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC17.19■□□□□ 0.34
TIMP4Q99727 AC104076.2-201ENST00000448912 469 ntBASIC17.19■□□□□ 0.34
TIMP4Q99727 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TIMP4Q99727 RBM42-202ENST00000586618 771 ntTSL 3 BASIC17.19■□□□□ 0.34
TIMP4Q99727 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC17.19■□□□□ 0.34
TIMP4Q99727 GPX4-207ENST00000589115 812 ntTSL 2 BASIC17.19■□□□□ 0.34
TIMP4Q99727 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC17.19■□□□□ 0.34
TIMP4Q99727 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC17.19■□□□□ 0.34
TIMP4Q99727 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
TIMP4Q99727 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TIMP4Q99727 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC17.19■□□□□ 0.34
TIMP4Q99727 SDHAP1-207ENST00000440850 2000 ntBASIC17.19■□□□□ 0.34
TIMP4Q99727 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
TIMP4Q99727 WIZP1-201ENST00000531444 2299 ntBASIC17.19■□□□□ 0.34
TIMP4Q99727 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
TIMP4Q99727 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC17.19■□□□□ 0.34
TIMP4Q99727 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC17.19■□□□□ 0.34
TIMP4Q99727 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
TIMP4Q99727 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
TIMP4Q99727 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC17.18■□□□□ 0.34
TIMP4Q99727 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC17.18■□□□□ 0.34
TIMP4Q99727 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
TIMP4Q99727 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
TIMP4Q99727 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
TIMP4Q99727 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
TIMP4Q99727 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC17.18■□□□□ 0.34
TIMP4Q99727 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TIMP4Q99727 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC17.18■□□□□ 0.34
TIMP4Q99727 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TIMP4Q99727 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
TIMP4Q99727 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC17.18■□□□□ 0.34
TIMP4Q99727 AL590326.2-201ENST00000625139 305 ntBASIC17.18■□□□□ 0.34
TIMP4Q99727 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC17.18■□□□□ 0.34
TIMP4Q99727 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
TIMP4Q99727 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
TIMP4Q99727 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC17.18■□□□□ 0.34
TIMP4Q99727 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
TIMP4Q99727 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TIMP4Q99727 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
TIMP4Q99727 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
TIMP4Q99727 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
TIMP4Q99727 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TIMP4Q99727 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TIMP4Q99727 USP39-202ENST00000409025 1946 ntTSL 5 BASIC17.17■□□□□ 0.34
TIMP4Q99727 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
TIMP4Q99727 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
TIMP4Q99727 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
TIMP4Q99727 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC17.17■□□□□ 0.34
TIMP4Q99727 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TIMP4Q99727 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TIMP4Q99727 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TIMP4Q99727 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TIMP4Q99727 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TIMP4Q99727 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC17.17■□□□□ 0.34
TIMP4Q99727 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC17.17■□□□□ 0.34
TIMP4Q99727 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TIMP4Q99727 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC17.17■□□□□ 0.34
TIMP4Q99727 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
TIMP4Q99727 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TIMP4Q99727 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TIMP4Q99727 AL390961.4-201ENST00000623958 2535 ntBASIC17.17■□□□□ 0.34
TIMP4Q99727 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
TIMP4Q99727 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC17.17■□□□□ 0.34
TIMP4Q99727 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
TIMP4Q99727 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TIMP4Q99727 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 45.8 ms