Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
ZNF540Q8NDQ6 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC17.36■□□□□ 0.37
ZNF540Q8NDQ6 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC17.36■□□□□ 0.37
ZNF540Q8NDQ6 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
ZNF540Q8NDQ6 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC17.36■□□□□ 0.37
ZNF540Q8NDQ6 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
ZNF540Q8NDQ6 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC17.36■□□□□ 0.37
ZNF540Q8NDQ6 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
ZNF540Q8NDQ6 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC17.36■□□□□ 0.37
ZNF540Q8NDQ6 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC17.36■□□□□ 0.37
ZNF540Q8NDQ6 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
ZNF540Q8NDQ6 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC17.36■□□□□ 0.37
ZNF540Q8NDQ6 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
ZNF540Q8NDQ6 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
ZNF540Q8NDQ6 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
ZNF540Q8NDQ6 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC17.36■□□□□ 0.37
ZNF540Q8NDQ6 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC17.36■□□□□ 0.37
ZNF540Q8NDQ6 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
ZNF540Q8NDQ6 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
ZNF540Q8NDQ6 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
ZNF540Q8NDQ6 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
ZNF540Q8NDQ6 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
ZNF540Q8NDQ6 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
ZNF540Q8NDQ6 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
ZNF540Q8NDQ6 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
ZNF540Q8NDQ6 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC17.35■□□□□ 0.37
ZNF540Q8NDQ6 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
ZNF540Q8NDQ6 UBQLN4P1-201ENST00000461599 1801 ntBASIC17.35■□□□□ 0.37
ZNF540Q8NDQ6 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
ZNF540Q8NDQ6 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC17.35■□□□□ 0.37
ZNF540Q8NDQ6 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC17.35■□□□□ 0.37
ZNF540Q8NDQ6 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC17.35■□□□□ 0.37
ZNF540Q8NDQ6 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC17.35■□□□□ 0.37
ZNF540Q8NDQ6 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
ZNF540Q8NDQ6 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC17.35■□□□□ 0.37
ZNF540Q8NDQ6 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
ZNF540Q8NDQ6 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC17.35■□□□□ 0.37
ZNF540Q8NDQ6 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
ZNF540Q8NDQ6 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC17.35■□□□□ 0.37
ZNF540Q8NDQ6 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
ZNF540Q8NDQ6 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
ZNF540Q8NDQ6 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
ZNF540Q8NDQ6 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
ZNF540Q8NDQ6 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC17.35■□□□□ 0.37
ZNF540Q8NDQ6 OR2A1-AS1-201ENST00000462305 773 ntBASIC17.35■□□□□ 0.37
ZNF540Q8NDQ6 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC17.35■□□□□ 0.37
ZNF540Q8NDQ6 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC17.35■□□□□ 0.37
ZNF540Q8NDQ6 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
ZNF540Q8NDQ6 MMAB-206ENST00000540016 945 ntTSL 3 BASIC17.35■□□□□ 0.37
ZNF540Q8NDQ6 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC17.35■□□□□ 0.37
ZNF540Q8NDQ6 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC17.35■□□□□ 0.37
ZNF540Q8NDQ6 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC17.35■□□□□ 0.37
ZNF540Q8NDQ6 BRWD1-AS2-201ENST00000603064 1028 ntBASIC17.35■□□□□ 0.37
ZNF540Q8NDQ6 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC17.35■□□□□ 0.37
ZNF540Q8NDQ6 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC17.35■□□□□ 0.37
ZNF540Q8NDQ6 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
ZNF540Q8NDQ6 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
ZNF540Q8NDQ6 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
ZNF540Q8NDQ6 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
ZNF540Q8NDQ6 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
ZNF540Q8NDQ6 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
ZNF540Q8NDQ6 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
ZNF540Q8NDQ6 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
ZNF540Q8NDQ6 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
ZNF540Q8NDQ6 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC17.35■□□□□ 0.37
ZNF540Q8NDQ6 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
ZNF540Q8NDQ6 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC17.35■□□□□ 0.37
ZNF540Q8NDQ6 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
ZNF540Q8NDQ6 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
ZNF540Q8NDQ6 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
ZNF540Q8NDQ6 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
ZNF540Q8NDQ6 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
ZNF540Q8NDQ6 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
ZNF540Q8NDQ6 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
ZNF540Q8NDQ6 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
ZNF540Q8NDQ6 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
ZNF540Q8NDQ6 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
ZNF540Q8NDQ6 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
ZNF540Q8NDQ6 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
ZNF540Q8NDQ6 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
ZNF540Q8NDQ6 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
ZNF540Q8NDQ6 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
ZNF540Q8NDQ6 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
ZNF540Q8NDQ6 KRT18P68-201ENST00000392293 1000 ntBASIC17.34■□□□□ 0.37
ZNF540Q8NDQ6 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
ZNF540Q8NDQ6 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
ZNF540Q8NDQ6 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
ZNF540Q8NDQ6 AC026366.1-201ENST00000488803 879 ntBASIC17.34■□□□□ 0.37
ZNF540Q8NDQ6 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
ZNF540Q8NDQ6 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC17.34■□□□□ 0.37
ZNF540Q8NDQ6 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
ZNF540Q8NDQ6 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
ZNF540Q8NDQ6 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
ZNF540Q8NDQ6 AC008764.6-201ENST00000595909 2069 ntBASIC17.34■□□□□ 0.37
ZNF540Q8NDQ6 AC008687.6-201ENST00000596318 630 ntBASIC17.34■□□□□ 0.37
ZNF540Q8NDQ6 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC17.34■□□□□ 0.37
ZNF540Q8NDQ6 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
ZNF540Q8NDQ6 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC17.34■□□□□ 0.37
ZNF540Q8NDQ6 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
ZNF540Q8NDQ6 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC17.34■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms