Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
CLRN3Q8NCR9 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
CLRN3Q8NCR9 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
CLRN3Q8NCR9 AP001094.4-201ENST00000579008 2176 ntBASIC14.98□□□□□ -0.01
CLRN3Q8NCR9 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC14.98□□□□□ -0.01
CLRN3Q8NCR9 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
CLRN3Q8NCR9 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
CLRN3Q8NCR9 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
CLRN3Q8NCR9 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
CLRN3Q8NCR9 BANP-227ENST00000626016 2144 ntTSL 2 BASIC14.98□□□□□ -0.01
CLRN3Q8NCR9 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
CLRN3Q8NCR9 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
CLRN3Q8NCR9 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC14.98□□□□□ -0.01
CLRN3Q8NCR9 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
CLRN3Q8NCR9 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
CLRN3Q8NCR9 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC14.98□□□□□ -0.01
CLRN3Q8NCR9 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
CLRN3Q8NCR9 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC14.98□□□□□ -0.01
CLRN3Q8NCR9 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC14.98□□□□□ -0.01
CLRN3Q8NCR9 AC010525.1-201ENST00000585559 441 ntBASIC14.98□□□□□ -0.01
CLRN3Q8NCR9 AC010997.5-201ENST00000609182 354 ntBASIC14.98□□□□□ -0.01
CLRN3Q8NCR9 EXOG-217ENST00000630638 197 ntTSL 5 BASIC14.98□□□□□ -0.01
CLRN3Q8NCR9 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC14.98□□□□□ -0.01
CLRN3Q8NCR9 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC14.98□□□□□ -0.01
CLRN3Q8NCR9 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
CLRN3Q8NCR9 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC14.98□□□□□ -0.01
CLRN3Q8NCR9 IRX1P1-201ENST00000438849 1838 ntBASIC14.98□□□□□ -0.01
CLRN3Q8NCR9 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC14.98□□□□□ -0.01
CLRN3Q8NCR9 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
CLRN3Q8NCR9 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
CLRN3Q8NCR9 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
CLRN3Q8NCR9 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC14.98□□□□□ -0.01
CLRN3Q8NCR9 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
CLRN3Q8NCR9 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
CLRN3Q8NCR9 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
CLRN3Q8NCR9 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC14.98□□□□□ -0.01
CLRN3Q8NCR9 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
CLRN3Q8NCR9 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
CLRN3Q8NCR9 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
CLRN3Q8NCR9 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
CLRN3Q8NCR9 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
CLRN3Q8NCR9 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CLRN3Q8NCR9 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
CLRN3Q8NCR9 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CLRN3Q8NCR9 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
CLRN3Q8NCR9 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CLRN3Q8NCR9 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
CLRN3Q8NCR9 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
CLRN3Q8NCR9 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC14.97□□□□□ -0.01
CLRN3Q8NCR9 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC14.97□□□□□ -0.01
CLRN3Q8NCR9 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
CLRN3Q8NCR9 AL662844.4-201ENST00000606367 2838 ntBASIC14.97□□□□□ -0.01
CLRN3Q8NCR9 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CLRN3Q8NCR9 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CLRN3Q8NCR9 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC14.97□□□□□ -0.01
CLRN3Q8NCR9 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
CLRN3Q8NCR9 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC14.97□□□□□ -0.01
CLRN3Q8NCR9 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC14.97□□□□□ -0.01
CLRN3Q8NCR9 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC14.97□□□□□ -0.01
CLRN3Q8NCR9 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC14.97□□□□□ -0.01
CLRN3Q8NCR9 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC14.97□□□□□ -0.01
CLRN3Q8NCR9 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CLRN3Q8NCR9 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
CLRN3Q8NCR9 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
CLRN3Q8NCR9 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
CLRN3Q8NCR9 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
CLRN3Q8NCR9 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
CLRN3Q8NCR9 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
CLRN3Q8NCR9 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CLRN3Q8NCR9 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CLRN3Q8NCR9 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC14.96□□□□□ -0.01
CLRN3Q8NCR9 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC14.96□□□□□ -0.01
CLRN3Q8NCR9 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
CLRN3Q8NCR9 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC14.96□□□□□ -0.01
CLRN3Q8NCR9 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
CLRN3Q8NCR9 TCAF2P1-201ENST00000291129 2421 ntBASIC14.96□□□□□ -0.01
CLRN3Q8NCR9 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC14.96□□□□□ -0.01
CLRN3Q8NCR9 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
CLRN3Q8NCR9 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
CLRN3Q8NCR9 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
CLRN3Q8NCR9 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
CLRN3Q8NCR9 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
CLRN3Q8NCR9 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
CLRN3Q8NCR9 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
CLRN3Q8NCR9 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC14.96□□□□□ -0.01
CLRN3Q8NCR9 AC006455.2-201ENST00000429931 906 ntBASIC14.96□□□□□ -0.01
CLRN3Q8NCR9 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC14.96□□□□□ -0.01
CLRN3Q8NCR9 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
CLRN3Q8NCR9 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC14.96□□□□□ -0.01
CLRN3Q8NCR9 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC14.96□□□□□ -0.01
CLRN3Q8NCR9 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
CLRN3Q8NCR9 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC14.96□□□□□ -0.01
CLRN3Q8NCR9 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
CLRN3Q8NCR9 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.01
CLRN3Q8NCR9 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
CLRN3Q8NCR9 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
CLRN3Q8NCR9 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC14.96□□□□□ -0.01
CLRN3Q8NCR9 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC14.96□□□□□ -0.01
CLRN3Q8NCR9 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC14.96□□□□□ -0.02
CLRN3Q8NCR9 AC116050.2-201ENST00000612102 1779 ntBASIC14.96□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms