Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC20.31■□□□□ 0.84
VPS52Q8N1B4 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC20.31■□□□□ 0.84
VPS52Q8N1B4 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
VPS52Q8N1B4 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
VPS52Q8N1B4 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
VPS52Q8N1B4 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
VPS52Q8N1B4 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
VPS52Q8N1B4 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC20.31■□□□□ 0.84
VPS52Q8N1B4 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
VPS52Q8N1B4 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
VPS52Q8N1B4 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
VPS52Q8N1B4 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC20.31■□□□□ 0.84
VPS52Q8N1B4 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC20.31■□□□□ 0.84
VPS52Q8N1B4 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC20.31■□□□□ 0.84
VPS52Q8N1B4 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC20.31■□□□□ 0.84
VPS52Q8N1B4 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
VPS52Q8N1B4 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
VPS52Q8N1B4 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
VPS52Q8N1B4 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
VPS52Q8N1B4 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC20.3■□□□□ 0.84
VPS52Q8N1B4 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC20.3■□□□□ 0.84
VPS52Q8N1B4 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC20.3■□□□□ 0.84
VPS52Q8N1B4 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
VPS52Q8N1B4 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
VPS52Q8N1B4 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
VPS52Q8N1B4 SPDYE15P-201ENST00000424157 909 ntBASIC20.3■□□□□ 0.84
VPS52Q8N1B4 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC20.3■□□□□ 0.84
VPS52Q8N1B4 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
VPS52Q8N1B4 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC20.3■□□□□ 0.84
VPS52Q8N1B4 CR769767.2-201ENST00000622735 460 ntBASIC20.3■□□□□ 0.84
VPS52Q8N1B4 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC20.3■□□□□ 0.84
VPS52Q8N1B4 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC20.3■□□□□ 0.84
VPS52Q8N1B4 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
VPS52Q8N1B4 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
VPS52Q8N1B4 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC20.3■□□□□ 0.84
VPS52Q8N1B4 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
VPS52Q8N1B4 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
VPS52Q8N1B4 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
VPS52Q8N1B4 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
VPS52Q8N1B4 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC20.29■□□□□ 0.84
VPS52Q8N1B4 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
VPS52Q8N1B4 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
VPS52Q8N1B4 AC116562.4-201ENST00000641316 2276 ntBASIC20.29■□□□□ 0.84
VPS52Q8N1B4 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC20.29■□□□□ 0.84
VPS52Q8N1B4 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
VPS52Q8N1B4 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC20.29■□□□□ 0.84
VPS52Q8N1B4 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
VPS52Q8N1B4 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
VPS52Q8N1B4 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
VPS52Q8N1B4 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
VPS52Q8N1B4 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
VPS52Q8N1B4 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
VPS52Q8N1B4 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
VPS52Q8N1B4 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC20.29■□□□□ 0.84
VPS52Q8N1B4 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC20.29■□□□□ 0.84
VPS52Q8N1B4 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC20.29■□□□□ 0.84
VPS52Q8N1B4 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC20.29■□□□□ 0.84
VPS52Q8N1B4 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
VPS52Q8N1B4 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
VPS52Q8N1B4 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
VPS52Q8N1B4 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
VPS52Q8N1B4 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
VPS52Q8N1B4 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC20.29■□□□□ 0.84
VPS52Q8N1B4 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
VPS52Q8N1B4 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
VPS52Q8N1B4 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
VPS52Q8N1B4 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
VPS52Q8N1B4 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
VPS52Q8N1B4 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
VPS52Q8N1B4 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
VPS52Q8N1B4 TREX1-205ENST00000625293 1783 ntBASIC20.29■□□□□ 0.84
VPS52Q8N1B4 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
VPS52Q8N1B4 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
VPS52Q8N1B4 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
VPS52Q8N1B4 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC20.28■□□□□ 0.84
VPS52Q8N1B4 ZNF815P-204ENST00000434898 1737 ntBASIC20.28■□□□□ 0.84
VPS52Q8N1B4 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
VPS52Q8N1B4 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
VPS52Q8N1B4 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
VPS52Q8N1B4 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC20.28■□□□□ 0.84
VPS52Q8N1B4 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
VPS52Q8N1B4 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
VPS52Q8N1B4 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
VPS52Q8N1B4 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
VPS52Q8N1B4 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
VPS52Q8N1B4 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
VPS52Q8N1B4 FGF14-AS2-201ENST00000606448 1074 ntBASIC20.28■□□□□ 0.84
VPS52Q8N1B4 NDUFV2-AS1-203ENST00000608008 779 ntBASIC20.28■□□□□ 0.84
VPS52Q8N1B4 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC20.28■□□□□ 0.84
VPS52Q8N1B4 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
VPS52Q8N1B4 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
VPS52Q8N1B4 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
VPS52Q8N1B4 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
VPS52Q8N1B4 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
VPS52Q8N1B4 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
VPS52Q8N1B4 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
VPS52Q8N1B4 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC20.28■□□□□ 0.84
VPS52Q8N1B4 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC20.28■□□□□ 0.84
VPS52Q8N1B4 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC20.28■□□□□ 0.84
VPS52Q8N1B4 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 46.6 ms