Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC21.5■■□□□ 1.03
SH3RF1Q7Z6J0 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC21.5■■□□□ 1.03
SH3RF1Q7Z6J0 AC008622.2-201ENST00000617006 1229 ntBASIC21.5■■□□□ 1.03
SH3RF1Q7Z6J0 AL691432.3-201ENST00000621860 400 ntBASIC21.5■■□□□ 1.03
SH3RF1Q7Z6J0 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC21.5■■□□□ 1.03
SH3RF1Q7Z6J0 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SH3RF1Q7Z6J0 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SH3RF1Q7Z6J0 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SH3RF1Q7Z6J0 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC21.5■■□□□ 1.03
SH3RF1Q7Z6J0 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC21.5■■□□□ 1.03
SH3RF1Q7Z6J0 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SH3RF1Q7Z6J0 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SH3RF1Q7Z6J0 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
SH3RF1Q7Z6J0 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC21.5■■□□□ 1.03
SH3RF1Q7Z6J0 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC21.5■■□□□ 1.03
SH3RF1Q7Z6J0 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC21.5■■□□□ 1.03
SH3RF1Q7Z6J0 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
SH3RF1Q7Z6J0 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC21.49■■□□□ 1.03
SH3RF1Q7Z6J0 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SH3RF1Q7Z6J0 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SH3RF1Q7Z6J0 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC21.49■■□□□ 1.03
SH3RF1Q7Z6J0 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SH3RF1Q7Z6J0 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC21.49■■□□□ 1.03
SH3RF1Q7Z6J0 SNX5-210ENST00000481323 562 ntTSL 3 BASIC21.49■■□□□ 1.03
SH3RF1Q7Z6J0 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
SH3RF1Q7Z6J0 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
SH3RF1Q7Z6J0 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SH3RF1Q7Z6J0 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
SH3RF1Q7Z6J0 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
SH3RF1Q7Z6J0 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SH3RF1Q7Z6J0 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
SH3RF1Q7Z6J0 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
SH3RF1Q7Z6J0 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SH3RF1Q7Z6J0 AC093525.10-201ENST00000625130 1569 ntBASIC21.48■■□□□ 1.03
SH3RF1Q7Z6J0 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC21.48■■□□□ 1.03
SH3RF1Q7Z6J0 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SH3RF1Q7Z6J0 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SH3RF1Q7Z6J0 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
SH3RF1Q7Z6J0 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SH3RF1Q7Z6J0 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SH3RF1Q7Z6J0 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SH3RF1Q7Z6J0 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SH3RF1Q7Z6J0 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
SH3RF1Q7Z6J0 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC21.48■■□□□ 1.03
SH3RF1Q7Z6J0 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SH3RF1Q7Z6J0 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
SH3RF1Q7Z6J0 TSPY21P-201ENST00000433481 731 ntBASIC21.48■■□□□ 1.03
SH3RF1Q7Z6J0 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC21.48■■□□□ 1.03
SH3RF1Q7Z6J0 TSPY23P-201ENST00000440136 739 ntBASIC21.48■■□□□ 1.03
SH3RF1Q7Z6J0 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC21.48■■□□□ 1.03
SH3RF1Q7Z6J0 AL136038.3-201ENST00000561909 1096 ntBASIC21.48■■□□□ 1.03
SH3RF1Q7Z6J0 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC21.48■■□□□ 1.03
SH3RF1Q7Z6J0 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC21.48■■□□□ 1.03
SH3RF1Q7Z6J0 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SH3RF1Q7Z6J0 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC21.48■■□□□ 1.03
SH3RF1Q7Z6J0 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SH3RF1Q7Z6J0 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC21.48■■□□□ 1.03
SH3RF1Q7Z6J0 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
SH3RF1Q7Z6J0 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC21.47■■□□□ 1.03
SH3RF1Q7Z6J0 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC21.47■■□□□ 1.03
SH3RF1Q7Z6J0 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
SH3RF1Q7Z6J0 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
SH3RF1Q7Z6J0 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
SH3RF1Q7Z6J0 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC21.47■■□□□ 1.03
SH3RF1Q7Z6J0 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC21.47■■□□□ 1.03
SH3RF1Q7Z6J0 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC21.47■■□□□ 1.03
SH3RF1Q7Z6J0 AL031598.1-201ENST00000561511 1773 ntBASIC21.47■■□□□ 1.03
SH3RF1Q7Z6J0 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC21.47■■□□□ 1.03
SH3RF1Q7Z6J0 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC21.47■■□□□ 1.03
SH3RF1Q7Z6J0 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC21.47■■□□□ 1.03
SH3RF1Q7Z6J0 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC21.47■■□□□ 1.03
SH3RF1Q7Z6J0 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
SH3RF1Q7Z6J0 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
SH3RF1Q7Z6J0 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
SH3RF1Q7Z6J0 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC21.47■■□□□ 1.03
SH3RF1Q7Z6J0 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
SH3RF1Q7Z6J0 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
SH3RF1Q7Z6J0 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
SH3RF1Q7Z6J0 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
SH3RF1Q7Z6J0 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC21.46■■□□□ 1.03
SH3RF1Q7Z6J0 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
SH3RF1Q7Z6J0 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
SH3RF1Q7Z6J0 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
SH3RF1Q7Z6J0 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC21.46■■□□□ 1.03
SH3RF1Q7Z6J0 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
SH3RF1Q7Z6J0 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC21.46■■□□□ 1.03
SH3RF1Q7Z6J0 AL512604.3-201ENST00000569583 964 ntBASIC21.46■■□□□ 1.03
SH3RF1Q7Z6J0 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC21.46■■□□□ 1.03
SH3RF1Q7Z6J0 AC083849.1-201ENST00000615227 514 ntBASIC21.46■■□□□ 1.03
SH3RF1Q7Z6J0 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC21.46■■□□□ 1.03
SH3RF1Q7Z6J0 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC21.46■■□□□ 1.03
SH3RF1Q7Z6J0 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC21.46■■□□□ 1.03
SH3RF1Q7Z6J0 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
SH3RF1Q7Z6J0 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
SH3RF1Q7Z6J0 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC21.46■■□□□ 1.03
SH3RF1Q7Z6J0 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
SH3RF1Q7Z6J0 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
SH3RF1Q7Z6J0 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
SH3RF1Q7Z6J0 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC21.46■■□□□ 1.03
SH3RF1Q7Z6J0 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms