Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
FOXA3P55318 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC14.09□□□□□ -0.15
FOXA3P55318 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
FOXA3P55318 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
FOXA3P55318 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC14.09□□□□□ -0.15
FOXA3P55318 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC14.09□□□□□ -0.15
FOXA3P55318 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC14.09□□□□□ -0.15
FOXA3P55318 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC14.09□□□□□ -0.15
FOXA3P55318 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC14.09□□□□□ -0.15
FOXA3P55318 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC14.09□□□□□ -0.15
FOXA3P55318 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC14.09□□□□□ -0.15
FOXA3P55318 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
FOXA3P55318 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
FOXA3P55318 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC14.09□□□□□ -0.15
FOXA3P55318 C2orf69P4-201ENST00000565394 541 ntBASIC14.09□□□□□ -0.15
FOXA3P55318 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
FOXA3P55318 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
FOXA3P55318 AC010536.3-201ENST00000620306 533 ntBASIC14.09□□□□□ -0.15
FOXA3P55318 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC14.09□□□□□ -0.15
FOXA3P55318 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC14.09□□□□□ -0.15
FOXA3P55318 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC14.09□□□□□ -0.15
FOXA3P55318 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
FOXA3P55318 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
FOXA3P55318 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
FOXA3P55318 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC14.09□□□□□ -0.15
FOXA3P55318 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
FOXA3P55318 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
FOXA3P55318 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.15
FOXA3P55318 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.15
FOXA3P55318 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC14.08□□□□□ -0.15
FOXA3P55318 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
FOXA3P55318 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC14.08□□□□□ -0.15
FOXA3P55318 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
FOXA3P55318 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.15
FOXA3P55318 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC14.08□□□□□ -0.15
FOXA3P55318 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
FOXA3P55318 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
FOXA3P55318 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
FOXA3P55318 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
FOXA3P55318 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
FOXA3P55318 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
FOXA3P55318 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
FOXA3P55318 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC14.08□□□□□ -0.16
FOXA3P55318 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
FOXA3P55318 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC14.08□□□□□ -0.16
FOXA3P55318 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC14.08□□□□□ -0.16
FOXA3P55318 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
FOXA3P55318 UQCRFS1P1-201ENST00000435169 820 ntBASIC14.08□□□□□ -0.16
FOXA3P55318 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
FOXA3P55318 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC14.08□□□□□ -0.16
FOXA3P55318 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
FOXA3P55318 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC14.08□□□□□ -0.16
FOXA3P55318 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC14.08□□□□□ -0.16
FOXA3P55318 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
FOXA3P55318 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC14.08□□□□□ -0.16
FOXA3P55318 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
FOXA3P55318 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
FOXA3P55318 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC14.08□□□□□ -0.16
FOXA3P55318 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
FOXA3P55318 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
FOXA3P55318 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
FOXA3P55318 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.16
FOXA3P55318 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
FOXA3P55318 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
FOXA3P55318 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
FOXA3P55318 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
FOXA3P55318 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC14.08□□□□□ -0.16
FOXA3P55318 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
FOXA3P55318 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
FOXA3P55318 AC008894.3-201ENST00000624324 3103 ntBASIC14.08□□□□□ -0.16
FOXA3P55318 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
FOXA3P55318 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC14.07□□□□□ -0.16
FOXA3P55318 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC14.07□□□□□ -0.16
FOXA3P55318 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
FOXA3P55318 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC14.07□□□□□ -0.16
FOXA3P55318 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC14.07□□□□□ -0.16
FOXA3P55318 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
FOXA3P55318 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
FOXA3P55318 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
FOXA3P55318 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
FOXA3P55318 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
FOXA3P55318 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
FOXA3P55318 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
FOXA3P55318 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC14.07□□□□□ -0.16
FOXA3P55318 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
FOXA3P55318 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC14.07□□□□□ -0.16
FOXA3P55318 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
FOXA3P55318 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
FOXA3P55318 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
FOXA3P55318 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
FOXA3P55318 AC084018.2-201ENST00000613093 2607 ntBASIC14.07□□□□□ -0.16
FOXA3P55318 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
FOXA3P55318 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
FOXA3P55318 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
FOXA3P55318 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
FOXA3P55318 AC124067.4-201ENST00000519691 2379 ntBASIC14.07□□□□□ -0.16
FOXA3P55318 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC14.07□□□□□ -0.16
FOXA3P55318 HYI-206ENST00000372434 1025 ntTSL 5 BASIC14.07□□□□□ -0.16
FOXA3P55318 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
FOXA3P55318 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms