Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SOX2P48431 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC16.53■□□□□ 0.24
SOX2P48431 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
SOX2P48431 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
SOX2P48431 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
SOX2P48431 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC16.53■□□□□ 0.24
SOX2P48431 PPP1R14BP2-201ENST00000426284 444 ntBASIC16.53■□□□□ 0.24
SOX2P48431 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC16.53■□□□□ 0.24
SOX2P48431 VPS53-216ENST00000574029 585 ntTSL 4 BASIC16.53■□□□□ 0.24
SOX2P48431 AC060766.5-201ENST00000590539 871 ntBASIC16.53■□□□□ 0.24
SOX2P48431 WT1-AS_3.1-201ENST00000613262 234 ntBASIC16.53■□□□□ 0.24
SOX2P48431 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC16.53■□□□□ 0.24
SOX2P48431 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SOX2P48431 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC16.53■□□□□ 0.24
SOX2P48431 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SOX2P48431 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SOX2P48431 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
SOX2P48431 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC16.53■□□□□ 0.24
SOX2P48431 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SOX2P48431 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
SOX2P48431 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC16.53■□□□□ 0.24
SOX2P48431 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
SOX2P48431 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
SOX2P48431 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
SOX2P48431 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
SOX2P48431 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
SOX2P48431 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
SOX2P48431 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC16.52■□□□□ 0.24
SOX2P48431 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
SOX2P48431 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC16.52■□□□□ 0.24
SOX2P48431 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
SOX2P48431 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
SOX2P48431 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
SOX2P48431 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
SOX2P48431 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
SOX2P48431 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
SOX2P48431 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC16.52■□□□□ 0.24
SOX2P48431 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC16.52■□□□□ 0.24
SOX2P48431 DLX3-202ENST00000512495 834 ntTSL 2 BASIC16.52■□□□□ 0.24
SOX2P48431 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
SOX2P48431 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
SOX2P48431 SOX15-203ENST00000570788 1093 ntBASIC16.52■□□□□ 0.24
SOX2P48431 MIR4758-201ENST00000577688 71 ntBASIC16.52■□□□□ 0.24
SOX2P48431 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
SOX2P48431 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
SOX2P48431 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC16.52■□□□□ 0.24
SOX2P48431 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
SOX2P48431 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC16.52■□□□□ 0.24
SOX2P48431 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
SOX2P48431 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
SOX2P48431 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.23
SOX2P48431 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.23
SOX2P48431 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.23
SOX2P48431 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
SOX2P48431 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
SOX2P48431 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.23
SOX2P48431 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.23
SOX2P48431 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC16.52■□□□□ 0.23
SOX2P48431 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
SOX2P48431 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
SOX2P48431 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SOX2P48431 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
SOX2P48431 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC16.51■□□□□ 0.23
SOX2P48431 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC16.51■□□□□ 0.23
SOX2P48431 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC16.51■□□□□ 0.23
SOX2P48431 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC16.51■□□□□ 0.23
SOX2P48431 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC16.51■□□□□ 0.23
SOX2P48431 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SOX2P48431 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
SOX2P48431 SNAI3-AS1-205ENST00000568633 2096 ntBASIC16.51■□□□□ 0.23
SOX2P48431 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
SOX2P48431 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC16.51■□□□□ 0.23
SOX2P48431 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
SOX2P48431 GAS2L1P1-201ENST00000420145 1480 ntBASIC16.51■□□□□ 0.23
SOX2P48431 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SOX2P48431 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SOX2P48431 TSPY21P-201ENST00000433481 731 ntBASIC16.51■□□□□ 0.23
SOX2P48431 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC16.51■□□□□ 0.23
SOX2P48431 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC16.51■□□□□ 0.23
SOX2P48431 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC16.51■□□□□ 0.23
SOX2P48431 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
SOX2P48431 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC16.51■□□□□ 0.23
SOX2P48431 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SOX2P48431 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SOX2P48431 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SOX2P48431 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SOX2P48431 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SOX2P48431 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
SOX2P48431 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC16.5■□□□□ 0.23
SOX2P48431 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
SOX2P48431 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SOX2P48431 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
SOX2P48431 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SOX2P48431 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
SOX2P48431 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
SOX2P48431 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC16.5■□□□□ 0.23
SOX2P48431 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SOX2P48431 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC16.5■□□□□ 0.23
SOX2P48431 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
SOX2P48431 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms