Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
CDX1P47902 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
CDX1P47902 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CDX1P47902 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CDX1P47902 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
CDX1P47902 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC15.29■□□□□ 0.04
CDX1P47902 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC15.29■□□□□ 0.04
CDX1P47902 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
CDX1P47902 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CDX1P47902 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
CDX1P47902 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CDX1P47902 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CDX1P47902 BX119927.1-201ENST00000636596 1552 ntBASIC15.29■□□□□ 0.04
CDX1P47902 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CDX1P47902 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CDX1P47902 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CDX1P47902 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
CDX1P47902 AC018553.1-201ENST00000616682 1458 ntBASIC15.29■□□□□ 0.04
CDX1P47902 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
CDX1P47902 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
CDX1P47902 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CDX1P47902 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CDX1P47902 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
CDX1P47902 KRT17P2-201ENST00000300992 1314 ntBASIC15.29■□□□□ 0.04
CDX1P47902 HTR7P1-201ENST00000538670 1336 ntBASIC15.29■□□□□ 0.04
CDX1P47902 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CDX1P47902 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CDX1P47902 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC15.29■□□□□ 0.04
CDX1P47902 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CDX1P47902 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC15.29■□□□□ 0.04
CDX1P47902 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC15.29■□□□□ 0.04
CDX1P47902 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC15.29■□□□□ 0.04
CDX1P47902 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
CDX1P47902 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC15.29■□□□□ 0.04
CDX1P47902 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC15.29■□□□□ 0.04
CDX1P47902 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
CDX1P47902 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CDX1P47902 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
CDX1P47902 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CDX1P47902 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CDX1P47902 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CDX1P47902 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CDX1P47902 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CDX1P47902 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CDX1P47902 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC15.29■□□□□ 0.04
CDX1P47902 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CDX1P47902 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC15.28■□□□□ 0.04
CDX1P47902 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CDX1P47902 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC15.28■□□□□ 0.04
CDX1P47902 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CDX1P47902 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
CDX1P47902 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
CDX1P47902 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC15.28■□□□□ 0.04
CDX1P47902 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CDX1P47902 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
CDX1P47902 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
CDX1P47902 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CDX1P47902 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
CDX1P47902 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CDX1P47902 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CDX1P47902 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CDX1P47902 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC15.28■□□□□ 0.04
CDX1P47902 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CDX1P47902 AL354751.1-201ENST00000412768 1863 ntBASIC15.28■□□□□ 0.04
CDX1P47902 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC15.28■□□□□ 0.04
CDX1P47902 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC15.28■□□□□ 0.04
CDX1P47902 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CDX1P47902 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
CDX1P47902 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC15.28■□□□□ 0.04
CDX1P47902 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC15.28■□□□□ 0.04
CDX1P47902 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
CDX1P47902 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CDX1P47902 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC15.28■□□□□ 0.04
CDX1P47902 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CDX1P47902 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CDX1P47902 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC15.28■□□□□ 0.04
CDX1P47902 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC15.27■□□□□ 0.04
CDX1P47902 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
CDX1P47902 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
CDX1P47902 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
CDX1P47902 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
CDX1P47902 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CDX1P47902 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CDX1P47902 AIRN-201ENST00000601203 4374 ntBASIC15.27■□□□□ 0.04
CDX1P47902 AC046158.3-201ENST00000624947 2558 ntBASIC15.27■□□□□ 0.04
CDX1P47902 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CDX1P47902 YBX1P10-201ENST00000444752 975 ntBASIC15.27■□□□□ 0.04
CDX1P47902 SNORA78-201ENST00000459373 127 ntBASIC15.27■□□□□ 0.04
CDX1P47902 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
CDX1P47902 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC15.27■□□□□ 0.04
CDX1P47902 AF186192.3-201ENST00000583427 947 ntBASIC15.27■□□□□ 0.04
CDX1P47902 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
CDX1P47902 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC15.27■□□□□ 0.03
CDX1P47902 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.03
CDX1P47902 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC15.27■□□□□ 0.03
CDX1P47902 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC15.27■□□□□ 0.03
CDX1P47902 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
CDX1P47902 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC15.27■□□□□ 0.03
CDX1P47902 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC15.27■□□□□ 0.03
CDX1P47902 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms