Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC17.9■□□□□ 0.46
MSX2P35548 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
MSX2P35548 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC17.9■□□□□ 0.46
MSX2P35548 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
MSX2P35548 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
MSX2P35548 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC17.9■□□□□ 0.46
MSX2P35548 MFF-205ENST00000354503 1085 ntTSL 2 BASIC17.9■□□□□ 0.46
MSX2P35548 YBX1P10-201ENST00000444752 975 ntBASIC17.9■□□□□ 0.46
MSX2P35548 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC17.9■□□□□ 0.46
MSX2P35548 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC17.9■□□□□ 0.46
MSX2P35548 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC17.9■□□□□ 0.46
MSX2P35548 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
MSX2P35548 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
MSX2P35548 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
MSX2P35548 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC17.9■□□□□ 0.46
MSX2P35548 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
MSX2P35548 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
MSX2P35548 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
MSX2P35548 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
MSX2P35548 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
MSX2P35548 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
MSX2P35548 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
MSX2P35548 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
MSX2P35548 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
MSX2P35548 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.46
MSX2P35548 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
MSX2P35548 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
MSX2P35548 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC17.89■□□□□ 0.46
MSX2P35548 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.46
MSX2P35548 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.46
MSX2P35548 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
MSX2P35548 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
MSX2P35548 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.46
MSX2P35548 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
MSX2P35548 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
MSX2P35548 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
MSX2P35548 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
MSX2P35548 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC17.89■□□□□ 0.45
MSX2P35548 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC17.89■□□□□ 0.45
MSX2P35548 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC17.89■□□□□ 0.45
MSX2P35548 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
MSX2P35548 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
MSX2P35548 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC17.89■□□□□ 0.45
MSX2P35548 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
MSX2P35548 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC17.89■□□□□ 0.45
MSX2P35548 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC17.89■□□□□ 0.45
MSX2P35548 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
MSX2P35548 AC231657.2-201ENST00000624556 255 ntBASIC17.89■□□□□ 0.45
MSX2P35548 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
MSX2P35548 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
MSX2P35548 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
MSX2P35548 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
MSX2P35548 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
MSX2P35548 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC17.89■□□□□ 0.45
MSX2P35548 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC17.89■□□□□ 0.45
MSX2P35548 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
MSX2P35548 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC17.89■□□□□ 0.45
MSX2P35548 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
MSX2P35548 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
MSX2P35548 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC17.88■□□□□ 0.45
MSX2P35548 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
MSX2P35548 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
MSX2P35548 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
MSX2P35548 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
MSX2P35548 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
MSX2P35548 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
MSX2P35548 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
MSX2P35548 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC17.88■□□□□ 0.45
MSX2P35548 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC17.88■□□□□ 0.45
MSX2P35548 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC17.88■□□□□ 0.45
MSX2P35548 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
MSX2P35548 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC17.88■□□□□ 0.45
MSX2P35548 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC17.88■□□□□ 0.45
MSX2P35548 RER1-204ENST00000378518 522 ntTSL 3 BASIC17.88■□□□□ 0.45
MSX2P35548 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC17.88■□□□□ 0.45
MSX2P35548 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
MSX2P35548 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
MSX2P35548 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC17.88■□□□□ 0.45
MSX2P35548 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
MSX2P35548 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC17.88■□□□□ 0.45
MSX2P35548 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
MSX2P35548 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC17.88■□□□□ 0.45
MSX2P35548 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
MSX2P35548 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC17.88■□□□□ 0.45
MSX2P35548 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC17.88■□□□□ 0.45
MSX2P35548 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
MSX2P35548 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC17.88■□□□□ 0.45
MSX2P35548 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC17.87■□□□□ 0.45
MSX2P35548 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC17.87■□□□□ 0.45
MSX2P35548 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
MSX2P35548 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
MSX2P35548 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
MSX2P35548 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC17.87■□□□□ 0.45
MSX2P35548 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
MSX2P35548 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
MSX2P35548 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
MSX2P35548 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
MSX2P35548 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC17.87■□□□□ 0.45
MSX2P35548 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
MSX2P35548 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 44.9 ms