Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC18.36■□□□□ 0.53
SHMT2P34897 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC18.36■□□□□ 0.53
SHMT2P34897 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC18.36■□□□□ 0.53
SHMT2P34897 DUT-205ENST00000558813 769 ntTSL 2 BASIC18.36■□□□□ 0.53
SHMT2P34897 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC18.36■□□□□ 0.53
SHMT2P34897 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SHMT2P34897 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SHMT2P34897 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC18.36■□□□□ 0.53
SHMT2P34897 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC18.36■□□□□ 0.53
SHMT2P34897 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
SHMT2P34897 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SHMT2P34897 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SHMT2P34897 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SHMT2P34897 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SHMT2P34897 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC18.35■□□□□ 0.53
SHMT2P34897 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SHMT2P34897 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
SHMT2P34897 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC18.35■□□□□ 0.53
SHMT2P34897 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC18.35■□□□□ 0.53
SHMT2P34897 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SHMT2P34897 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC18.35■□□□□ 0.53
SHMT2P34897 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SHMT2P34897 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SHMT2P34897 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC18.35■□□□□ 0.53
SHMT2P34897 ECEL1P2-202ENST00000465689 757 ntBASIC18.35■□□□□ 0.53
SHMT2P34897 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC18.35■□□□□ 0.53
SHMT2P34897 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC18.35■□□□□ 0.53
SHMT2P34897 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC18.35■□□□□ 0.53
SHMT2P34897 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC18.35■□□□□ 0.53
SHMT2P34897 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
SHMT2P34897 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
SHMT2P34897 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SHMT2P34897 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
SHMT2P34897 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SHMT2P34897 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
SHMT2P34897 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
SHMT2P34897 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC18.35■□□□□ 0.53
SHMT2P34897 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC18.35■□□□□ 0.53
SHMT2P34897 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
SHMT2P34897 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SHMT2P34897 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SHMT2P34897 KRT8P3-201ENST00000519669 1449 ntBASIC18.34■□□□□ 0.53
SHMT2P34897 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SHMT2P34897 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC18.34■□□□□ 0.53
SHMT2P34897 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC18.34■□□□□ 0.53
SHMT2P34897 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SHMT2P34897 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC18.34■□□□□ 0.53
SHMT2P34897 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC18.34■□□□□ 0.53
SHMT2P34897 AR-207ENST00000612010 3896 ntTSL 5 BASIC18.34■□□□□ 0.53
SHMT2P34897 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC18.34■□□□□ 0.53
SHMT2P34897 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
SHMT2P34897 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SHMT2P34897 BUB3-202ENST00000368859 667 ntTSL 3 BASIC18.34■□□□□ 0.53
SHMT2P34897 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC18.34■□□□□ 0.53
SHMT2P34897 HMGA1P5-201ENST00000412453 271 ntBASIC18.34■□□□□ 0.53
SHMT2P34897 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SHMT2P34897 SLC25A3P1-201ENST00000443844 931 ntBASIC18.34■□□□□ 0.53
SHMT2P34897 GXYLT1P6-201ENST00000456472 1187 ntBASIC18.34■□□□□ 0.53
SHMT2P34897 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC18.34■□□□□ 0.53
SHMT2P34897 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC18.34■□□□□ 0.53
SHMT2P34897 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC18.34■□□□□ 0.53
SHMT2P34897 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC18.34■□□□□ 0.53
SHMT2P34897 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SHMT2P34897 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
SHMT2P34897 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SHMT2P34897 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SHMT2P34897 AC120498.9-201ENST00000339021 3867 ntBASIC18.34■□□□□ 0.53
SHMT2P34897 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SHMT2P34897 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SHMT2P34897 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC18.33■□□□□ 0.53
SHMT2P34897 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
SHMT2P34897 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC18.33■□□□□ 0.53
SHMT2P34897 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
SHMT2P34897 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
SHMT2P34897 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC18.33■□□□□ 0.53
SHMT2P34897 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
SHMT2P34897 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.53
SHMT2P34897 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SHMT2P34897 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
SHMT2P34897 INGX-201ENST00000359239 846 ntBASIC18.33■□□□□ 0.52
SHMT2P34897 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
SHMT2P34897 AC113347.1-201ENST00000413321 391 ntBASIC18.33■□□□□ 0.52
SHMT2P34897 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
SHMT2P34897 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC18.33■□□□□ 0.52
SHMT2P34897 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SHMT2P34897 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
SHMT2P34897 GPX4-207ENST00000589115 812 ntTSL 2 BASIC18.33■□□□□ 0.52
SHMT2P34897 FAM87A-204ENST00000613235 858 ntBASIC18.33■□□□□ 0.52
SHMT2P34897 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
SHMT2P34897 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
SHMT2P34897 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC18.33■□□□□ 0.52
SHMT2P34897 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SHMT2P34897 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
SHMT2P34897 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SHMT2P34897 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC18.33■□□□□ 0.52
SHMT2P34897 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
SHMT2P34897 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SHMT2P34897 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC18.32■□□□□ 0.52
SHMT2P34897 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SHMT2P34897 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms