Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
SMARCA1P28370 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC21.52■■□□□ 1.04
SMARCA1P28370 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
SMARCA1P28370 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
SMARCA1P28370 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
SMARCA1P28370 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC21.52■■□□□ 1.04
SMARCA1P28370 AC024243.1-201ENST00000609234 778 ntBASIC21.52■■□□□ 1.04
SMARCA1P28370 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC21.52■■□□□ 1.04
SMARCA1P28370 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
SMARCA1P28370 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC21.52■■□□□ 1.04
SMARCA1P28370 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.04
SMARCA1P28370 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
SMARCA1P28370 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
SMARCA1P28370 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC21.52■■□□□ 1.03
SMARCA1P28370 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.03
SMARCA1P28370 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
SMARCA1P28370 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
SMARCA1P28370 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
SMARCA1P28370 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC21.51■■□□□ 1.03
SMARCA1P28370 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC21.51■■□□□ 1.03
SMARCA1P28370 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
SMARCA1P28370 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
SMARCA1P28370 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
SMARCA1P28370 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
SMARCA1P28370 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC21.51■■□□□ 1.03
SMARCA1P28370 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
SMARCA1P28370 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
SMARCA1P28370 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
SMARCA1P28370 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC21.51■■□□□ 1.03
SMARCA1P28370 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC21.51■■□□□ 1.03
SMARCA1P28370 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC21.51■■□□□ 1.03
SMARCA1P28370 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC21.51■■□□□ 1.03
SMARCA1P28370 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC21.51■■□□□ 1.03
SMARCA1P28370 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC21.51■■□□□ 1.03
SMARCA1P28370 AC022616.7-201ENST00000525383 220 ntBASIC21.51■■□□□ 1.03
SMARCA1P28370 LINC01238-205ENST00000567549 1107 ntBASIC21.51■■□□□ 1.03
SMARCA1P28370 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
SMARCA1P28370 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC21.51■■□□□ 1.03
SMARCA1P28370 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC21.51■■□□□ 1.03
SMARCA1P28370 AL590326.2-201ENST00000625139 305 ntBASIC21.51■■□□□ 1.03
SMARCA1P28370 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
SMARCA1P28370 KRT8P50-201ENST00000562022 1438 ntBASIC21.51■■□□□ 1.03
SMARCA1P28370 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
SMARCA1P28370 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC21.51■■□□□ 1.03
SMARCA1P28370 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
SMARCA1P28370 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
SMARCA1P28370 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
SMARCA1P28370 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC21.51■■□□□ 1.03
SMARCA1P28370 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC21.51■■□□□ 1.03
SMARCA1P28370 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC21.5■■□□□ 1.03
SMARCA1P28370 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC21.5■■□□□ 1.03
SMARCA1P28370 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SMARCA1P28370 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC21.5■■□□□ 1.03
SMARCA1P28370 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
SMARCA1P28370 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC21.5■■□□□ 1.03
SMARCA1P28370 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC21.5■■□□□ 1.03
SMARCA1P28370 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SMARCA1P28370 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC21.5■■□□□ 1.03
SMARCA1P28370 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC21.5■■□□□ 1.03
SMARCA1P28370 MIR3917-201ENST00000580971 93 ntBASIC21.5■■□□□ 1.03
SMARCA1P28370 NAT14-202ENST00000587400 416 ntTSL 5 BASIC21.5■■□□□ 1.03
SMARCA1P28370 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
SMARCA1P28370 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
SMARCA1P28370 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC21.5■■□□□ 1.03
SMARCA1P28370 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
SMARCA1P28370 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
SMARCA1P28370 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SMARCA1P28370 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC21.5■■□□□ 1.03
SMARCA1P28370 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
SMARCA1P28370 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC21.5■■□□□ 1.03
SMARCA1P28370 AP000974.1-201ENST00000623909 2387 ntBASIC21.5■■□□□ 1.03
SMARCA1P28370 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SMARCA1P28370 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC21.49■■□□□ 1.03
SMARCA1P28370 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
SMARCA1P28370 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SMARCA1P28370 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SMARCA1P28370 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
SMARCA1P28370 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SMARCA1P28370 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SMARCA1P28370 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC21.49■■□□□ 1.03
SMARCA1P28370 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC21.49■■□□□ 1.03
SMARCA1P28370 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC21.49■■□□□ 1.03
SMARCA1P28370 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC21.49■■□□□ 1.03
SMARCA1P28370 AC034232.1-201ENST00000506026 1064 ntBASIC21.49■■□□□ 1.03
SMARCA1P28370 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC21.49■■□□□ 1.03
SMARCA1P28370 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC21.49■■□□□ 1.03
SMARCA1P28370 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC21.49■■□□□ 1.03
SMARCA1P28370 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC21.49■■□□□ 1.03
SMARCA1P28370 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
SMARCA1P28370 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
SMARCA1P28370 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
SMARCA1P28370 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC21.49■■□□□ 1.03
SMARCA1P28370 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SMARCA1P28370 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SMARCA1P28370 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SMARCA1P28370 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC21.48■■□□□ 1.03
SMARCA1P28370 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
SMARCA1P28370 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SMARCA1P28370 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
SMARCA1P28370 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC21.48■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms