Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
PCNAP12004 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC18.28■□□□□ 0.52
PCNAP12004 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
PCNAP12004 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
PCNAP12004 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
PCNAP12004 AC004951.3-201ENST00000418645 1148 ntBASIC18.28■□□□□ 0.52
PCNAP12004 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC18.28■□□□□ 0.52
PCNAP12004 AC011298.2-201ENST00000617989 482 ntBASIC18.28■□□□□ 0.52
PCNAP12004 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC18.28■□□□□ 0.52
PCNAP12004 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC18.28■□□□□ 0.52
PCNAP12004 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
PCNAP12004 AL135905.2-201ENST00000584934 1404 ntBASIC18.28■□□□□ 0.52
PCNAP12004 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
PCNAP12004 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PCNAP12004 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PCNAP12004 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
PCNAP12004 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PCNAP12004 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC18.28■□□□□ 0.52
PCNAP12004 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PCNAP12004 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC18.28■□□□□ 0.52
PCNAP12004 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
PCNAP12004 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
PCNAP12004 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC18.27■□□□□ 0.52
PCNAP12004 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC18.27■□□□□ 0.52
PCNAP12004 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PCNAP12004 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PCNAP12004 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
PCNAP12004 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PCNAP12004 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
PCNAP12004 KRT8P11-201ENST00000409686 1436 ntBASIC18.27■□□□□ 0.52
PCNAP12004 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC18.27■□□□□ 0.52
PCNAP12004 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PCNAP12004 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PCNAP12004 SAPCD2P4-201ENST00000424595 1171 ntBASIC18.27■□□□□ 0.52
PCNAP12004 AC091390.4-202ENST00000476426 537 ntBASIC18.27■□□□□ 0.52
PCNAP12004 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
PCNAP12004 GLRB-205ENST00000512619 728 ntTSL 3 BASIC18.27■□□□□ 0.52
PCNAP12004 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
PCNAP12004 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
PCNAP12004 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PCNAP12004 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC18.27■□□□□ 0.52
PCNAP12004 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
PCNAP12004 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.51
PCNAP12004 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.51
PCNAP12004 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
PCNAP12004 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC18.27■□□□□ 0.51
PCNAP12004 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC18.27■□□□□ 0.51
PCNAP12004 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PCNAP12004 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC18.26■□□□□ 0.51
PCNAP12004 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
PCNAP12004 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PCNAP12004 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PCNAP12004 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC18.26■□□□□ 0.51
PCNAP12004 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PCNAP12004 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
PCNAP12004 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PCNAP12004 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PCNAP12004 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PCNAP12004 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC18.26■□□□□ 0.51
PCNAP12004 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC18.26■□□□□ 0.51
PCNAP12004 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC18.26■□□□□ 0.51
PCNAP12004 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
PCNAP12004 CD177P1-201ENST00000606252 935 ntBASIC18.26■□□□□ 0.51
PCNAP12004 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC18.26■□□□□ 0.51
PCNAP12004 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PCNAP12004 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PCNAP12004 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
PCNAP12004 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PCNAP12004 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
PCNAP12004 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PCNAP12004 USP49-202ENST00000373010 2446 ntTSL 5 BASIC18.25■□□□□ 0.51
PCNAP12004 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
PCNAP12004 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC18.25■□□□□ 0.51
PCNAP12004 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PCNAP12004 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PCNAP12004 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
PCNAP12004 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PCNAP12004 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PCNAP12004 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC18.25■□□□□ 0.51
PCNAP12004 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC18.25■□□□□ 0.51
PCNAP12004 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC18.25■□□□□ 0.51
PCNAP12004 AC026271.3-201ENST00000571884 352 ntBASIC18.25■□□□□ 0.51
PCNAP12004 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PCNAP12004 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PCNAP12004 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PCNAP12004 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PCNAP12004 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PCNAP12004 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC18.25■□□□□ 0.51
PCNAP12004 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC18.25■□□□□ 0.51
PCNAP12004 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PCNAP12004 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC18.24■□□□□ 0.51
PCNAP12004 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PCNAP12004 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC18.24■□□□□ 0.51
PCNAP12004 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC18.24■□□□□ 0.51
PCNAP12004 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
PCNAP12004 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PCNAP12004 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PCNAP12004 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC18.24■□□□□ 0.51
PCNAP12004 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC18.24■□□□□ 0.51
PCNAP12004 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms