Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
HMGB1P09429 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC22.13■■□□□ 1.13
HMGB1P09429 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
HMGB1P09429 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC22.12■■□□□ 1.13
HMGB1P09429 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
HMGB1P09429 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC22.12■■□□□ 1.13
HMGB1P09429 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC22.12■■□□□ 1.13
HMGB1P09429 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC22.12■■□□□ 1.13
HMGB1P09429 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC22.12■■□□□ 1.13
HMGB1P09429 AC005082.1-201ENST00000413042 2259 ntBASIC22.12■■□□□ 1.13
HMGB1P09429 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
HMGB1P09429 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
HMGB1P09429 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC22.12■■□□□ 1.13
HMGB1P09429 AL355075.4-201ENST00000554988 638 ntBASIC22.12■■□□□ 1.13
HMGB1P09429 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC22.12■■□□□ 1.13
HMGB1P09429 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC22.12■■□□□ 1.13
HMGB1P09429 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC22.12■■□□□ 1.13
HMGB1P09429 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
HMGB1P09429 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC22.12■■□□□ 1.13
HMGB1P09429 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC22.11■■□□□ 1.13
HMGB1P09429 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC22.11■■□□□ 1.13
HMGB1P09429 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC22.11■■□□□ 1.13
HMGB1P09429 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
HMGB1P09429 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
HMGB1P09429 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC22.11■■□□□ 1.13
HMGB1P09429 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
HMGB1P09429 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
HMGB1P09429 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
HMGB1P09429 PRR31-201ENST00000371629 978 ntTSL 2 BASIC22.11■■□□□ 1.13
HMGB1P09429 MIR564-202ENST00000385049 94 ntBASIC22.11■■□□□ 1.13
HMGB1P09429 CCR12P-201ENST00000446203 998 ntBASIC22.11■■□□□ 1.13
HMGB1P09429 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC22.11■■□□□ 1.13
HMGB1P09429 KRT18P41-201ENST00000518924 1277 ntBASIC22.11■■□□□ 1.13
HMGB1P09429 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC22.11■■□□□ 1.13
HMGB1P09429 DET1-205ENST00000558413 583 ntTSL 4 BASIC22.11■■□□□ 1.13
HMGB1P09429 AL353719.1-201ENST00000566847 864 ntBASIC22.11■■□□□ 1.13
HMGB1P09429 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC22.11■■□□□ 1.13
HMGB1P09429 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC22.11■■□□□ 1.13
HMGB1P09429 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC22.11■■□□□ 1.13
HMGB1P09429 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
HMGB1P09429 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC22.11■■□□□ 1.13
HMGB1P09429 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC22.11■■□□□ 1.13
HMGB1P09429 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
HMGB1P09429 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC22.11■■□□□ 1.13
HMGB1P09429 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
HMGB1P09429 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
HMGB1P09429 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
HMGB1P09429 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
HMGB1P09429 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
HMGB1P09429 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
HMGB1P09429 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
HMGB1P09429 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
HMGB1P09429 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC22.1■■□□□ 1.13
HMGB1P09429 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
HMGB1P09429 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
HMGB1P09429 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC22.1■■□□□ 1.13
HMGB1P09429 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC22.1■■□□□ 1.13
HMGB1P09429 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC22.1■■□□□ 1.13
HMGB1P09429 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC22.1■■□□□ 1.13
HMGB1P09429 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
HMGB1P09429 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC22.1■■□□□ 1.13
HMGB1P09429 GLDC-219ENST00000640208 420 ntTSL 2 BASIC22.1■■□□□ 1.13
HMGB1P09429 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC22.1■■□□□ 1.13
HMGB1P09429 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC22.1■■□□□ 1.13
HMGB1P09429 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC22.1■■□□□ 1.13
HMGB1P09429 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
HMGB1P09429 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC22.1■■□□□ 1.13
HMGB1P09429 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC22.1■■□□□ 1.13
HMGB1P09429 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
HMGB1P09429 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
HMGB1P09429 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC22.1■■□□□ 1.13
HMGB1P09429 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC22.09■■□□□ 1.13
HMGB1P09429 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC22.09■■□□□ 1.13
HMGB1P09429 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC22.09■■□□□ 1.13
HMGB1P09429 MIR1238-201ENST00000408483 83 ntBASIC22.09■■□□□ 1.13
HMGB1P09429 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
HMGB1P09429 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC22.09■■□□□ 1.13
HMGB1P09429 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC22.09■■□□□ 1.13
HMGB1P09429 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC22.09■■□□□ 1.13
HMGB1P09429 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC22.09■■□□□ 1.13
HMGB1P09429 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
HMGB1P09429 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
HMGB1P09429 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
HMGB1P09429 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
HMGB1P09429 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC22.09■■□□□ 1.13
HMGB1P09429 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
HMGB1P09429 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
HMGB1P09429 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
HMGB1P09429 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
HMGB1P09429 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
HMGB1P09429 AC009113.1-201ENST00000570267 2443 ntBASIC22.08■■□□□ 1.13
HMGB1P09429 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC22.08■■□□□ 1.13
HMGB1P09429 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
HMGB1P09429 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
HMGB1P09429 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
HMGB1P09429 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
HMGB1P09429 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC22.08■■□□□ 1.13
HMGB1P09429 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
HMGB1P09429 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC22.08■■□□□ 1.13
HMGB1P09429 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC22.08■■□□□ 1.13
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms