Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
LDLRP01130 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
LDLRP01130 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
LDLRP01130 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
LDLRP01130 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC18.13■□□□□ 0.49
LDLRP01130 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
LDLRP01130 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
LDLRP01130 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
LDLRP01130 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LDLRP01130 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC18.12■□□□□ 0.49
LDLRP01130 SAPCD2P4-201ENST00000424595 1171 ntBASIC18.12■□□□□ 0.49
LDLRP01130 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC18.12■□□□□ 0.49
LDLRP01130 GRAP-204ENST00000573099 846 ntTSL 3 BASIC18.12■□□□□ 0.49
LDLRP01130 MIR6786-201ENST00000616843 113 ntBASIC18.12■□□□□ 0.49
LDLRP01130 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
LDLRP01130 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
LDLRP01130 NOC2LP1-202ENST00000452600 2235 ntBASIC18.12■□□□□ 0.49
LDLRP01130 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC18.12■□□□□ 0.49
LDLRP01130 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
LDLRP01130 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC18.12■□□□□ 0.49
LDLRP01130 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
LDLRP01130 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LDLRP01130 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LDLRP01130 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
LDLRP01130 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
LDLRP01130 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC18.12■□□□□ 0.49
LDLRP01130 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
LDLRP01130 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC18.12■□□□□ 0.49
LDLRP01130 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LDLRP01130 NOC2LP2-201ENST00000407594 1944 ntBASIC18.11■□□□□ 0.49
LDLRP01130 FP475955.4-201ENST00000623131 1990 ntBASIC18.11■□□□□ 0.49
LDLRP01130 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
LDLRP01130 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC18.11■□□□□ 0.49
LDLRP01130 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC18.11■□□□□ 0.49
LDLRP01130 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LDLRP01130 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
LDLRP01130 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC18.11■□□□□ 0.49
LDLRP01130 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC18.11■□□□□ 0.49
LDLRP01130 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC18.11■□□□□ 0.49
LDLRP01130 SERP1-205ENST00000487153 657 ntTSL 4 BASIC18.11■□□□□ 0.49
LDLRP01130 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LDLRP01130 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC18.11■□□□□ 0.49
LDLRP01130 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LDLRP01130 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LDLRP01130 NME3-204ENST00000563498 920 ntTSL 2 BASIC18.11■□□□□ 0.49
LDLRP01130 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC18.11■□□□□ 0.49
LDLRP01130 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
LDLRP01130 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
LDLRP01130 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
LDLRP01130 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
LDLRP01130 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC18.11■□□□□ 0.49
LDLRP01130 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
LDLRP01130 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC18.11■□□□□ 0.49
LDLRP01130 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
LDLRP01130 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LDLRP01130 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
LDLRP01130 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
LDLRP01130 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
LDLRP01130 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
LDLRP01130 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
LDLRP01130 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LDLRP01130 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC18.1■□□□□ 0.49
LDLRP01130 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LDLRP01130 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC18.1■□□□□ 0.49
LDLRP01130 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LDLRP01130 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
LDLRP01130 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LDLRP01130 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC18.1■□□□□ 0.49
LDLRP01130 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
LDLRP01130 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC18.1■□□□□ 0.49
LDLRP01130 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC18.1■□□□□ 0.49
LDLRP01130 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC18.1■□□□□ 0.49
LDLRP01130 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LDLRP01130 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LDLRP01130 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC18.1■□□□□ 0.49
LDLRP01130 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LDLRP01130 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LDLRP01130 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LDLRP01130 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC18.1■□□□□ 0.49
LDLRP01130 BRWD1-AS2-201ENST00000603064 1028 ntBASIC18.1■□□□□ 0.49
LDLRP01130 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LDLRP01130 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LDLRP01130 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC18.1■□□□□ 0.49
LDLRP01130 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LDLRP01130 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
LDLRP01130 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
LDLRP01130 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LDLRP01130 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
LDLRP01130 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC18.1■□□□□ 0.49
LDLRP01130 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC18.1■□□□□ 0.49
LDLRP01130 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LDLRP01130 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC18.09■□□□□ 0.49
LDLRP01130 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LDLRP01130 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
LDLRP01130 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LDLRP01130 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
LDLRP01130 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC18.09■□□□□ 0.49
LDLRP01130 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LDLRP01130 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
LDLRP01130 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms