Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
SEMA3DO95025 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
SEMA3DO95025 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SEMA3DO95025 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
SEMA3DO95025 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
SEMA3DO95025 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC17.97■□□□□ 0.47
SEMA3DO95025 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC17.97■□□□□ 0.47
SEMA3DO95025 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SEMA3DO95025 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SEMA3DO95025 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
SEMA3DO95025 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC17.97■□□□□ 0.47
SEMA3DO95025 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC17.97■□□□□ 0.47
SEMA3DO95025 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC17.97■□□□□ 0.47
SEMA3DO95025 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC17.97■□□□□ 0.47
SEMA3DO95025 COBL-210ENST00000632460 1941 ntTSL 5 BASIC17.97■□□□□ 0.47
SEMA3DO95025 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SEMA3DO95025 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SEMA3DO95025 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SEMA3DO95025 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
SEMA3DO95025 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
SEMA3DO95025 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
SEMA3DO95025 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
SEMA3DO95025 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
SEMA3DO95025 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SEMA3DO95025 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC17.97■□□□□ 0.47
SEMA3DO95025 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
SEMA3DO95025 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SEMA3DO95025 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SEMA3DO95025 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SEMA3DO95025 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC17.96■□□□□ 0.47
SEMA3DO95025 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SEMA3DO95025 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
SEMA3DO95025 ANO7L1-203ENST00000602586 1720 ntBASIC17.96■□□□□ 0.47
SEMA3DO95025 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
SEMA3DO95025 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
SEMA3DO95025 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC17.96■□□□□ 0.47
SEMA3DO95025 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
SEMA3DO95025 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC17.96■□□□□ 0.47
SEMA3DO95025 MFAP1P1-201ENST00000442257 1255 ntBASIC17.96■□□□□ 0.47
SEMA3DO95025 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC17.96■□□□□ 0.47
SEMA3DO95025 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC17.96■□□□□ 0.47
SEMA3DO95025 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC17.96■□□□□ 0.47
SEMA3DO95025 AP006294.2-201ENST00000641667 209 ntBASIC17.96■□□□□ 0.47
SEMA3DO95025 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SEMA3DO95025 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
SEMA3DO95025 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SEMA3DO95025 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
SEMA3DO95025 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
SEMA3DO95025 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.46
SEMA3DO95025 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC17.96■□□□□ 0.46
SEMA3DO95025 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC17.95■□□□□ 0.46
SEMA3DO95025 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC17.95■□□□□ 0.46
SEMA3DO95025 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC17.95■□□□□ 0.46
SEMA3DO95025 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC17.95■□□□□ 0.46
SEMA3DO95025 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC17.95■□□□□ 0.46
SEMA3DO95025 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC17.95■□□□□ 0.46
SEMA3DO95025 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SEMA3DO95025 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SEMA3DO95025 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC17.95■□□□□ 0.46
SEMA3DO95025 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC17.95■□□□□ 0.46
SEMA3DO95025 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
SEMA3DO95025 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
SEMA3DO95025 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
SEMA3DO95025 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
SEMA3DO95025 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC17.95■□□□□ 0.46
SEMA3DO95025 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
SEMA3DO95025 CA15P1-201ENST00000481698 905 ntBASIC17.95■□□□□ 0.46
SEMA3DO95025 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC17.95■□□□□ 0.46
SEMA3DO95025 SLC25A1P4-201ENST00000567977 778 ntBASIC17.95■□□□□ 0.46
SEMA3DO95025 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC17.95■□□□□ 0.46
SEMA3DO95025 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC17.95■□□□□ 0.46
SEMA3DO95025 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC17.95■□□□□ 0.46
SEMA3DO95025 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SEMA3DO95025 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
SEMA3DO95025 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SEMA3DO95025 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
SEMA3DO95025 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
SEMA3DO95025 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC17.95■□□□□ 0.46
SEMA3DO95025 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC17.95■□□□□ 0.46
SEMA3DO95025 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SEMA3DO95025 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC17.94■□□□□ 0.46
SEMA3DO95025 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC17.94■□□□□ 0.46
SEMA3DO95025 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SEMA3DO95025 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
SEMA3DO95025 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
SEMA3DO95025 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
SEMA3DO95025 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
SEMA3DO95025 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC17.94■□□□□ 0.46
SEMA3DO95025 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
SEMA3DO95025 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
SEMA3DO95025 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SEMA3DO95025 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SEMA3DO95025 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SEMA3DO95025 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SEMA3DO95025 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC17.94■□□□□ 0.46
SEMA3DO95025 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC17.94■□□□□ 0.46
SEMA3DO95025 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
SEMA3DO95025 AC097488.1-201ENST00000507834 756 ntBASIC17.94■□□□□ 0.46
SEMA3DO95025 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
SEMA3DO95025 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms