Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
VPS4BO75351 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC18.4■□□□□ 0.54
VPS4BO75351 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
VPS4BO75351 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
VPS4BO75351 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC18.4■□□□□ 0.54
VPS4BO75351 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
VPS4BO75351 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC18.4■□□□□ 0.54
VPS4BO75351 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
VPS4BO75351 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
VPS4BO75351 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
VPS4BO75351 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC18.4■□□□□ 0.54
VPS4BO75351 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
VPS4BO75351 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
VPS4BO75351 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
VPS4BO75351 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
VPS4BO75351 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC18.39■□□□□ 0.54
VPS4BO75351 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC18.39■□□□□ 0.53
VPS4BO75351 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
VPS4BO75351 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
VPS4BO75351 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
VPS4BO75351 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
VPS4BO75351 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC18.39■□□□□ 0.53
VPS4BO75351 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
VPS4BO75351 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
VPS4BO75351 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
VPS4BO75351 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC18.39■□□□□ 0.53
VPS4BO75351 RNF146-204ENST00000476956 884 ntTSL 2 BASIC18.39■□□□□ 0.53
VPS4BO75351 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC18.39■□□□□ 0.53
VPS4BO75351 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC18.39■□□□□ 0.53
VPS4BO75351 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
VPS4BO75351 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
VPS4BO75351 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.53
VPS4BO75351 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
VPS4BO75351 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC18.39■□□□□ 0.53
VPS4BO75351 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
VPS4BO75351 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
VPS4BO75351 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
VPS4BO75351 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
VPS4BO75351 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VPS4BO75351 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC18.38■□□□□ 0.53
VPS4BO75351 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VPS4BO75351 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
VPS4BO75351 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC18.38■□□□□ 0.53
VPS4BO75351 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC18.38■□□□□ 0.53
VPS4BO75351 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC18.38■□□□□ 0.53
VPS4BO75351 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VPS4BO75351 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC18.38■□□□□ 0.53
VPS4BO75351 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VPS4BO75351 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VPS4BO75351 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VPS4BO75351 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC18.38■□□□□ 0.53
VPS4BO75351 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC18.38■□□□□ 0.53
VPS4BO75351 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC18.38■□□□□ 0.53
VPS4BO75351 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
VPS4BO75351 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC18.38■□□□□ 0.53
VPS4BO75351 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC18.38■□□□□ 0.53
VPS4BO75351 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC18.38■□□□□ 0.53
VPS4BO75351 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC18.38■□□□□ 0.53
VPS4BO75351 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VPS4BO75351 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC18.38■□□□□ 0.53
VPS4BO75351 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
VPS4BO75351 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VPS4BO75351 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
VPS4BO75351 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC18.38■□□□□ 0.53
VPS4BO75351 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
VPS4BO75351 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC18.38■□□□□ 0.53
VPS4BO75351 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VPS4BO75351 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
VPS4BO75351 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
VPS4BO75351 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC18.37■□□□□ 0.53
VPS4BO75351 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
VPS4BO75351 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
VPS4BO75351 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
VPS4BO75351 AL354751.1-201ENST00000412768 1863 ntBASIC18.37■□□□□ 0.53
VPS4BO75351 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC18.37■□□□□ 0.53
VPS4BO75351 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
VPS4BO75351 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
VPS4BO75351 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
VPS4BO75351 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
VPS4BO75351 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
VPS4BO75351 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC18.37■□□□□ 0.53
VPS4BO75351 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
VPS4BO75351 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC18.37■□□□□ 0.53
VPS4BO75351 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
VPS4BO75351 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
VPS4BO75351 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC18.37■□□□□ 0.53
VPS4BO75351 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC18.37■□□□□ 0.53
VPS4BO75351 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
VPS4BO75351 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC18.37■□□□□ 0.53
VPS4BO75351 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
VPS4BO75351 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
VPS4BO75351 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
VPS4BO75351 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC18.37■□□□□ 0.53
VPS4BO75351 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC18.37■□□□□ 0.53
VPS4BO75351 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
VPS4BO75351 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC18.37■□□□□ 0.53
VPS4BO75351 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC18.37■□□□□ 0.53
VPS4BO75351 COBL-210ENST00000632460 1941 ntTSL 5 BASIC18.37■□□□□ 0.53
VPS4BO75351 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
VPS4BO75351 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms