Protein–RNA interactions for Protein: O60609

GFRA3, GDNF family receptor alpha-3, humanhuman

Predictions only

Length 400 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GFRA3O60609 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
GFRA3O60609 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
GFRA3O60609 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
GFRA3O60609 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
GFRA3O60609 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
GFRA3O60609 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
GFRA3O60609 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
GFRA3O60609 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC18.19■□□□□ 0.5
GFRA3O60609 CENPM-204ENST00000402420 688 ntTSL 5 BASIC18.19■□□□□ 0.5
GFRA3O60609 AC015922.1-201ENST00000421102 1152 ntBASIC18.19■□□□□ 0.5
GFRA3O60609 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC18.19■□□□□ 0.5
GFRA3O60609 PRSS29P-201ENST00000440800 595 ntBASIC18.19■□□□□ 0.5
GFRA3O60609 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC18.19■□□□□ 0.5
GFRA3O60609 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC18.19■□□□□ 0.5
GFRA3O60609 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC18.19■□□□□ 0.5
GFRA3O60609 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC18.19■□□□□ 0.5
GFRA3O60609 COX5A-206ENST00000568783 571 ntTSL 3 BASIC18.19■□□□□ 0.5
GFRA3O60609 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC18.19■□□□□ 0.5
GFRA3O60609 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC18.19■□□□□ 0.5
GFRA3O60609 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
GFRA3O60609 AC064836.3-201ENST00000607928 673 ntBASIC18.19■□□□□ 0.5
GFRA3O60609 AC012645.4-201ENST00000610691 1061 ntBASIC18.19■□□□□ 0.5
GFRA3O60609 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
GFRA3O60609 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC18.19■□□□□ 0.5
GFRA3O60609 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
GFRA3O60609 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
GFRA3O60609 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
GFRA3O60609 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
GFRA3O60609 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
GFRA3O60609 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
GFRA3O60609 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC18.18■□□□□ 0.5
GFRA3O60609 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
GFRA3O60609 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC18.18■□□□□ 0.5
GFRA3O60609 AL049796.1-201ENST00000565336 1766 ntBASIC18.18■□□□□ 0.5
GFRA3O60609 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
GFRA3O60609 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
GFRA3O60609 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
GFRA3O60609 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC18.18■□□□□ 0.5
GFRA3O60609 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
GFRA3O60609 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
GFRA3O60609 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC18.18■□□□□ 0.5
GFRA3O60609 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC18.18■□□□□ 0.5
GFRA3O60609 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC18.18■□□□□ 0.5
GFRA3O60609 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC18.18■□□□□ 0.5
GFRA3O60609 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC18.18■□□□□ 0.5
GFRA3O60609 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC18.18■□□□□ 0.5
GFRA3O60609 AC093512.1-201ENST00000617969 520 ntBASIC18.18■□□□□ 0.5
GFRA3O60609 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
GFRA3O60609 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
GFRA3O60609 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
GFRA3O60609 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC18.18■□□□□ 0.5
GFRA3O60609 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
GFRA3O60609 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC18.17■□□□□ 0.5
GFRA3O60609 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
GFRA3O60609 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
GFRA3O60609 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
GFRA3O60609 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
GFRA3O60609 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
GFRA3O60609 CCS-201ENST00000310190 942 ntTSL 5 BASIC18.17■□□□□ 0.5
GFRA3O60609 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
GFRA3O60609 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
GFRA3O60609 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC18.17■□□□□ 0.5
GFRA3O60609 AC009947.1-201ENST00000444350 727 ntBASIC18.17■□□□□ 0.5
GFRA3O60609 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
GFRA3O60609 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC18.17■□□□□ 0.5
GFRA3O60609 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
GFRA3O60609 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC18.17■□□□□ 0.5
GFRA3O60609 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC18.17■□□□□ 0.5
GFRA3O60609 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC18.17■□□□□ 0.5
GFRA3O60609 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC18.17■□□□□ 0.5
GFRA3O60609 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
GFRA3O60609 AL008721.1-201ENST00000609964 604 ntBASIC18.17■□□□□ 0.5
GFRA3O60609 TP73-AS1-210ENST00000637775 1455 ntBASIC18.17■□□□□ 0.5
GFRA3O60609 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
GFRA3O60609 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC18.17■□□□□ 0.5
GFRA3O60609 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
GFRA3O60609 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
GFRA3O60609 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
GFRA3O60609 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC18.17■□□□□ 0.5
GFRA3O60609 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
GFRA3O60609 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
GFRA3O60609 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC18.17■□□□□ 0.5
GFRA3O60609 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
GFRA3O60609 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC18.17■□□□□ 0.5
GFRA3O60609 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC18.17■□□□□ 0.5
GFRA3O60609 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC18.16■□□□□ 0.5
GFRA3O60609 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
GFRA3O60609 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC18.16■□□□□ 0.5
GFRA3O60609 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
GFRA3O60609 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
GFRA3O60609 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC18.16■□□□□ 0.5
GFRA3O60609 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC18.16■□□□□ 0.5
GFRA3O60609 AP002414.3-201ENST00000589352 1468 ntBASIC18.16■□□□□ 0.5
GFRA3O60609 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
GFRA3O60609 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
GFRA3O60609 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC18.16■□□□□ 0.5
GFRA3O60609 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
GFRA3O60609 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
GFRA3O60609 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
GFRA3O60609 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms