Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
SGCEO43556 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SGCEO43556 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC16.59■□□□□ 0.25
SGCEO43556 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
SGCEO43556 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SGCEO43556 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
SGCEO43556 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
SGCEO43556 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
SGCEO43556 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC16.58■□□□□ 0.25
SGCEO43556 NEFHP1-201ENST00000412845 2629 ntBASIC16.58■□□□□ 0.25
SGCEO43556 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC16.58■□□□□ 0.25
SGCEO43556 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
SGCEO43556 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
SGCEO43556 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
SGCEO43556 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC16.58■□□□□ 0.24
SGCEO43556 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC16.58■□□□□ 0.24
SGCEO43556 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC16.58■□□□□ 0.24
SGCEO43556 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC16.58■□□□□ 0.24
SGCEO43556 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC16.58■□□□□ 0.24
SGCEO43556 GRAP-204ENST00000573099 846 ntTSL 3 BASIC16.58■□□□□ 0.24
SGCEO43556 AC113410.3-201ENST00000623366 203 ntBASIC16.58■□□□□ 0.24
SGCEO43556 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
SGCEO43556 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
SGCEO43556 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC16.58■□□□□ 0.24
SGCEO43556 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
SGCEO43556 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC16.58■□□□□ 0.24
SGCEO43556 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
SGCEO43556 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
SGCEO43556 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
SGCEO43556 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
SGCEO43556 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SGCEO43556 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC16.57■□□□□ 0.24
SGCEO43556 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SGCEO43556 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SGCEO43556 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC16.57■□□□□ 0.24
SGCEO43556 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SGCEO43556 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SGCEO43556 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC16.57■□□□□ 0.24
SGCEO43556 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SGCEO43556 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SGCEO43556 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SGCEO43556 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
SGCEO43556 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
SGCEO43556 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC16.57■□□□□ 0.24
SGCEO43556 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SGCEO43556 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SGCEO43556 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC16.57■□□□□ 0.24
SGCEO43556 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SGCEO43556 MIR718-201ENST00000390190 70 ntBASIC16.57■□□□□ 0.24
SGCEO43556 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC16.57■□□□□ 0.24
SGCEO43556 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC16.57■□□□□ 0.24
SGCEO43556 NUDT16P1-203ENST00000513809 620 ntBASIC16.57■□□□□ 0.24
SGCEO43556 REXO2-216ENST00000544196 452 ntTSL 3 BASIC16.57■□□□□ 0.24
SGCEO43556 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC16.57■□□□□ 0.24
SGCEO43556 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC16.57■□□□□ 0.24
SGCEO43556 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
SGCEO43556 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
SGCEO43556 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SGCEO43556 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
SGCEO43556 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
SGCEO43556 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
SGCEO43556 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
SGCEO43556 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SGCEO43556 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC16.57■□□□□ 0.24
SGCEO43556 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SGCEO43556 CROCCP3-202ENST00000420820 1947 ntBASIC16.57■□□□□ 0.24
SGCEO43556 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC16.56■□□□□ 0.24
SGCEO43556 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SGCEO43556 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC16.56■□□□□ 0.24
SGCEO43556 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
SGCEO43556 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
SGCEO43556 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
SGCEO43556 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC16.56■□□□□ 0.24
SGCEO43556 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
SGCEO43556 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC16.56■□□□□ 0.24
SGCEO43556 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SGCEO43556 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
SGCEO43556 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC16.56■□□□□ 0.24
SGCEO43556 KATNBL1P6-202ENST00000562413 1466 ntBASIC16.56■□□□□ 0.24
SGCEO43556 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SGCEO43556 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SGCEO43556 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SGCEO43556 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC16.56■□□□□ 0.24
SGCEO43556 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC16.56■□□□□ 0.24
SGCEO43556 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SGCEO43556 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC16.56■□□□□ 0.24
SGCEO43556 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
SGCEO43556 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SGCEO43556 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC16.56■□□□□ 0.24
SGCEO43556 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC16.56■□□□□ 0.24
SGCEO43556 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC16.56■□□□□ 0.24
SGCEO43556 AC008040.2-201ENST00000461049 708 ntBASIC16.56■□□□□ 0.24
SGCEO43556 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC16.56■□□□□ 0.24
SGCEO43556 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
SGCEO43556 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC16.56■□□□□ 0.24
SGCEO43556 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC16.56■□□□□ 0.24
SGCEO43556 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC16.56■□□□□ 0.24
SGCEO43556 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC16.56■□□□□ 0.24
SGCEO43556 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SGCEO43556 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms