Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 OR7E14P-202ENST00000530490 1290 ntBASIC14.53□□□□□ -0.08
COL6A5A8TX70 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
COL6A5A8TX70 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC14.53□□□□□ -0.08
COL6A5A8TX70 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL6A5A8TX70 TEN1-204ENST00000588202 862 ntTSL 3 BASIC14.53□□□□□ -0.08
COL6A5A8TX70 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC14.53□□□□□ -0.08
COL6A5A8TX70 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
COL6A5A8TX70 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
COL6A5A8TX70 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
COL6A5A8TX70 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
COL6A5A8TX70 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
COL6A5A8TX70 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC14.53□□□□□ -0.08
COL6A5A8TX70 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL6A5A8TX70 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL6A5A8TX70 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC14.53□□□□□ -0.08
COL6A5A8TX70 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC14.53□□□□□ -0.08
COL6A5A8TX70 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC14.53□□□□□ -0.08
COL6A5A8TX70 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC14.53□□□□□ -0.08
COL6A5A8TX70 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL6A5A8TX70 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
COL6A5A8TX70 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC14.53□□□□□ -0.08
COL6A5A8TX70 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
COL6A5A8TX70 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
COL6A5A8TX70 AC079834.2-201ENST00000609776 1949 ntBASIC14.53□□□□□ -0.08
COL6A5A8TX70 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
COL6A5A8TX70 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
COL6A5A8TX70 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
COL6A5A8TX70 AL139400.1-201ENST00000366220 510 ntBASIC14.52□□□□□ -0.08
COL6A5A8TX70 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC14.52□□□□□ -0.08
COL6A5A8TX70 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC14.52□□□□□ -0.08
COL6A5A8TX70 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
COL6A5A8TX70 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
COL6A5A8TX70 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC14.52□□□□□ -0.08
COL6A5A8TX70 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
COL6A5A8TX70 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
COL6A5A8TX70 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
COL6A5A8TX70 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
COL6A5A8TX70 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
COL6A5A8TX70 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC14.52□□□□□ -0.09
COL6A5A8TX70 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
COL6A5A8TX70 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC14.52□□□□□ -0.09
COL6A5A8TX70 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC14.52□□□□□ -0.09
COL6A5A8TX70 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
COL6A5A8TX70 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
COL6A5A8TX70 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC14.52□□□□□ -0.09
COL6A5A8TX70 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC14.52□□□□□ -0.09
COL6A5A8TX70 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC14.52□□□□□ -0.09
COL6A5A8TX70 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC14.52□□□□□ -0.09
COL6A5A8TX70 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
COL6A5A8TX70 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC14.52□□□□□ -0.09
COL6A5A8TX70 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.09
COL6A5A8TX70 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
COL6A5A8TX70 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
COL6A5A8TX70 MOK-225ENST00000522867 1883 ntTSL 5 BASIC14.52□□□□□ -0.09
COL6A5A8TX70 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC14.51□□□□□ -0.09
COL6A5A8TX70 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
COL6A5A8TX70 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
COL6A5A8TX70 THAP5-204ENST00000438865 868 ntTSL 2 BASIC14.51□□□□□ -0.09
COL6A5A8TX70 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
COL6A5A8TX70 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC14.51□□□□□ -0.09
COL6A5A8TX70 MIR4745-201ENST00000577608 62 ntBASIC14.51□□□□□ -0.09
COL6A5A8TX70 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC14.51□□□□□ -0.09
COL6A5A8TX70 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC14.51□□□□□ -0.09
COL6A5A8TX70 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC14.51□□□□□ -0.09
COL6A5A8TX70 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
COL6A5A8TX70 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
COL6A5A8TX70 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC14.51□□□□□ -0.09
COL6A5A8TX70 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
COL6A5A8TX70 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC14.51□□□□□ -0.09
COL6A5A8TX70 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC14.51□□□□□ -0.09
COL6A5A8TX70 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC14.51□□□□□ -0.09
COL6A5A8TX70 GSAP-205ENST00000430584 600 ntTSL 5 BASIC14.51□□□□□ -0.09
COL6A5A8TX70 AC105339.3-201ENST00000560043 636 ntBASIC14.51□□□□□ -0.09
COL6A5A8TX70 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC14.51□□□□□ -0.09
COL6A5A8TX70 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC14.51□□□□□ -0.09
COL6A5A8TX70 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC14.51□□□□□ -0.09
COL6A5A8TX70 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
COL6A5A8TX70 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
COL6A5A8TX70 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
COL6A5A8TX70 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
COL6A5A8TX70 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
COL6A5A8TX70 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC14.51□□□□□ -0.09
COL6A5A8TX70 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC14.51□□□□□ -0.09
COL6A5A8TX70 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
COL6A5A8TX70 ANKRD18DP-204ENST00000455355 1975 ntBASIC14.51□□□□□ -0.09
COL6A5A8TX70 AP001271.2-201ENST00000624018 1556 ntBASIC14.51□□□□□ -0.09
COL6A5A8TX70 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
COL6A5A8TX70 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
COL6A5A8TX70 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
COL6A5A8TX70 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC14.5□□□□□ -0.09
COL6A5A8TX70 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC14.5□□□□□ -0.09
COL6A5A8TX70 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
COL6A5A8TX70 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC14.5□□□□□ -0.09
COL6A5A8TX70 AC245100.3-201ENST00000441281 285 ntBASIC14.5□□□□□ -0.09
COL6A5A8TX70 AC009947.1-201ENST00000444350 727 ntBASIC14.5□□□□□ -0.09
COL6A5A8TX70 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC14.5□□□□□ -0.09
COL6A5A8TX70 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC14.5□□□□□ -0.09
COL6A5A8TX70 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
COL6A5A8TX70 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
COL6A5A8TX70 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms