Protein–RNA interactions for Protein: Q9Y5H9

PCDHA2, Protocadherin alpha-2, humanhuman

Predictions only

Length 948 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA2Q9Y5H9 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC28.39■■■□□ 2.13
PCDHA2Q9Y5H9 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
PCDHA2Q9Y5H9 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
PCDHA2Q9Y5H9 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC28.38■■■□□ 2.13
PCDHA2Q9Y5H9 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC28.38■■■□□ 2.13
PCDHA2Q9Y5H9 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
PCDHA2Q9Y5H9 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC28.38■■■□□ 2.13
PCDHA2Q9Y5H9 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC28.37■■■□□ 2.13
PCDHA2Q9Y5H9 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC28.37■■■□□ 2.13
PCDHA2Q9Y5H9 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
PCDHA2Q9Y5H9 AC142086.6-201ENST00000621154 1765 ntBASIC28.37■■■□□ 2.13
PCDHA2Q9Y5H9 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC28.36■■■□□ 2.13
PCDHA2Q9Y5H9 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC28.36■■■□□ 2.13
PCDHA2Q9Y5H9 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC28.36■■■□□ 2.13
PCDHA2Q9Y5H9 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC28.36■■■□□ 2.13
PCDHA2Q9Y5H9 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
PCDHA2Q9Y5H9 GPX1-201ENST00000419349 1106 ntBASIC28.36■■■□□ 2.13
PCDHA2Q9Y5H9 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC28.36■■■□□ 2.13
PCDHA2Q9Y5H9 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC28.35■■■□□ 2.13
PCDHA2Q9Y5H9 MEST-211ENST00000437945 1455 ntTSL 5 BASIC28.35■■■□□ 2.13
PCDHA2Q9Y5H9 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC28.35■■■□□ 2.13
PCDHA2Q9Y5H9 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC28.35■■■□□ 2.13
PCDHA2Q9Y5H9 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC28.34■■■□□ 2.13
PCDHA2Q9Y5H9 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC28.34■■■□□ 2.13
PCDHA2Q9Y5H9 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC28.34■■■□□ 2.13
PCDHA2Q9Y5H9 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
PCDHA2Q9Y5H9 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
PCDHA2Q9Y5H9 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC28.33■■■□□ 2.13
PCDHA2Q9Y5H9 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC28.32■■■□□ 2.12
PCDHA2Q9Y5H9 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC28.32■■■□□ 2.12
PCDHA2Q9Y5H9 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC28.32■■■□□ 2.12
PCDHA2Q9Y5H9 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC28.31■■■□□ 2.12
PCDHA2Q9Y5H9 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
PCDHA2Q9Y5H9 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC28.31■■■□□ 2.12
PCDHA2Q9Y5H9 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
PCDHA2Q9Y5H9 CHST11-203ENST00000547956 936 ntTSL 2 BASIC28.31■■■□□ 2.12
PCDHA2Q9Y5H9 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC28.31■■■□□ 2.12
PCDHA2Q9Y5H9 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC28.31■■■□□ 2.12
PCDHA2Q9Y5H9 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
PCDHA2Q9Y5H9 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
PCDHA2Q9Y5H9 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC28.3■■■□□ 2.12
PCDHA2Q9Y5H9 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
PCDHA2Q9Y5H9 PEX7-203ENST00000541292 945 ntTSL 5 BASIC28.3■■■□□ 2.12
PCDHA2Q9Y5H9 RARRES2P2-201ENST00000394842 485 ntBASIC28.29■■■□□ 2.12
PCDHA2Q9Y5H9 CEP120-209ENST00000515110 606 ntTSL 3 BASIC28.29■■■□□ 2.12
PCDHA2Q9Y5H9 RPS2-210ENST00000530225 765 ntTSL 2 BASIC28.29■■■□□ 2.12
PCDHA2Q9Y5H9 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
PCDHA2Q9Y5H9 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC28.28■■■□□ 2.12
PCDHA2Q9Y5H9 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC28.28■■■□□ 2.12
PCDHA2Q9Y5H9 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
PCDHA2Q9Y5H9 AC148477.6-201ENST00000623746 465 ntBASIC28.28■■■□□ 2.12
PCDHA2Q9Y5H9 PROC-203ENST00000409048 1586 ntTSL 5 BASIC28.28■■■□□ 2.12
PCDHA2Q9Y5H9 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
PCDHA2Q9Y5H9 RNF126P1-201ENST00000567452 1320 ntBASIC28.27■■■□□ 2.12
PCDHA2Q9Y5H9 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
PCDHA2Q9Y5H9 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC28.27■■■□□ 2.12
PCDHA2Q9Y5H9 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
PCDHA2Q9Y5H9 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC28.27■■■□□ 2.12
PCDHA2Q9Y5H9 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.12
PCDHA2Q9Y5H9 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC28.25■■■□□ 2.11
PCDHA2Q9Y5H9 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC28.25■■■□□ 2.11
PCDHA2Q9Y5H9 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC28.25■■■□□ 2.11
PCDHA2Q9Y5H9 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC28.25■■■□□ 2.11
PCDHA2Q9Y5H9 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
PCDHA2Q9Y5H9 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
PCDHA2Q9Y5H9 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC28.25■■■□□ 2.11
PCDHA2Q9Y5H9 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
PCDHA2Q9Y5H9 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC28.24■■■□□ 2.11
PCDHA2Q9Y5H9 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC28.24■■■□□ 2.11
PCDHA2Q9Y5H9 AC022413.1-201ENST00000624602 984 ntBASIC28.24■■■□□ 2.11
PCDHA2Q9Y5H9 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
PCDHA2Q9Y5H9 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
PCDHA2Q9Y5H9 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC28.23■■■□□ 2.11
PCDHA2Q9Y5H9 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC28.23■■■□□ 2.11
PCDHA2Q9Y5H9 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC28.23■■■□□ 2.11
PCDHA2Q9Y5H9 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
PCDHA2Q9Y5H9 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC28.22■■■□□ 2.11
PCDHA2Q9Y5H9 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
PCDHA2Q9Y5H9 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC28.21■■■□□ 2.11
PCDHA2Q9Y5H9 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC28.21■■■□□ 2.11
PCDHA2Q9Y5H9 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
PCDHA2Q9Y5H9 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
PCDHA2Q9Y5H9 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC28.2■■■□□ 2.1
PCDHA2Q9Y5H9 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
PCDHA2Q9Y5H9 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC28.19■■■□□ 2.1
PCDHA2Q9Y5H9 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
PCDHA2Q9Y5H9 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC28.18■■■□□ 2.1
PCDHA2Q9Y5H9 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC28.18■■■□□ 2.1
PCDHA2Q9Y5H9 AP002414.2-202ENST00000590929 1450 ntBASIC28.18■■■□□ 2.1
PCDHA2Q9Y5H9 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC28.18■■■□□ 2.1
PCDHA2Q9Y5H9 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC28.17■■■□□ 2.1
PCDHA2Q9Y5H9 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
PCDHA2Q9Y5H9 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
PCDHA2Q9Y5H9 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
PCDHA2Q9Y5H9 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC28.16■■■□□ 2.1
PCDHA2Q9Y5H9 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC28.16■■■□□ 2.1
PCDHA2Q9Y5H9 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
PCDHA2Q9Y5H9 MIR219A2-201ENST00000608502 1504 ntBASIC28.16■■■□□ 2.1
PCDHA2Q9Y5H9 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
PCDHA2Q9Y5H9 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC28.16■■■□□ 2.1
Retrieved 100 of 98,524 protein–RNA pairs in 13.6 ms