Protein–RNA interactions for Protein: Q9NY93

DDX56, Probable ATP-dependent RNA helicase DDX56, humanhuman

Known RBP Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56Q9NY93 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
DDX56Q9NY93 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC26.22■■□□□ 1.79
DDX56Q9NY93 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC26.22■■□□□ 1.79
DDX56Q9NY93 DUX4L29-201ENST00000425409 679 ntBASIC26.22■■□□□ 1.79
DDX56Q9NY93 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
DDX56Q9NY93 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
DDX56Q9NY93 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
DDX56Q9NY93 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC26.21■■□□□ 1.79
DDX56Q9NY93 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
DDX56Q9NY93 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC26.2■■□□□ 1.79
DDX56Q9NY93 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.79
DDX56Q9NY93 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC26.2■■□□□ 1.79
DDX56Q9NY93 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
DDX56Q9NY93 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC26.2■■□□□ 1.78
DDX56Q9NY93 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC26.19■■□□□ 1.78
DDX56Q9NY93 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC26.19■■□□□ 1.78
DDX56Q9NY93 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
DDX56Q9NY93 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
DDX56Q9NY93 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC26.18■■□□□ 1.78
DDX56Q9NY93 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC26.18■■□□□ 1.78
DDX56Q9NY93 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC26.18■■□□□ 1.78
DDX56Q9NY93 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC26.18■■□□□ 1.78
DDX56Q9NY93 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC26.18■■□□□ 1.78
DDX56Q9NY93 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
DDX56Q9NY93 AC110285.7-201ENST00000624417 1536 ntBASIC26.18■■□□□ 1.78
DDX56Q9NY93 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC26.17■■□□□ 1.78
DDX56Q9NY93 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC26.17■■□□□ 1.78
DDX56Q9NY93 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC26.16■■□□□ 1.78
DDX56Q9NY93 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC26.16■■□□□ 1.78
DDX56Q9NY93 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC26.16■■□□□ 1.78
DDX56Q9NY93 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC26.15■■□□□ 1.78
DDX56Q9NY93 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
DDX56Q9NY93 PEX7-203ENST00000541292 945 ntTSL 5 BASIC26.14■■□□□ 1.78
DDX56Q9NY93 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC26.14■■□□□ 1.77
DDX56Q9NY93 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC26.13■■□□□ 1.77
DDX56Q9NY93 CREM-210ENST00000374721 2020 ntTSL 5 BASIC26.13■■□□□ 1.77
DDX56Q9NY93 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC26.13■■□□□ 1.77
DDX56Q9NY93 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
DDX56Q9NY93 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
DDX56Q9NY93 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
DDX56Q9NY93 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC26.11■■□□□ 1.77
DDX56Q9NY93 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
DDX56Q9NY93 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
DDX56Q9NY93 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC26.11■■□□□ 1.77
DDX56Q9NY93 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC26.1■■□□□ 1.77
DDX56Q9NY93 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC26.1■■□□□ 1.77
DDX56Q9NY93 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC26.1■■□□□ 1.77
DDX56Q9NY93 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC26.1■■□□□ 1.77
DDX56Q9NY93 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
DDX56Q9NY93 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC26.09■■□□□ 1.77
DDX56Q9NY93 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
DDX56Q9NY93 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
DDX56Q9NY93 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC26.09■■□□□ 1.77
DDX56Q9NY93 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC26.08■■□□□ 1.77
DDX56Q9NY93 RPS2P35-201ENST00000443417 897 ntBASIC26.08■■□□□ 1.77
DDX56Q9NY93 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC26.08■■□□□ 1.77
DDX56Q9NY93 PKM-203ENST00000389093 2279 ntTSL 5 BASIC26.08■■□□□ 1.77
DDX56Q9NY93 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
DDX56Q9NY93 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
DDX56Q9NY93 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
DDX56Q9NY93 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC26.06■■□□□ 1.76
DDX56Q9NY93 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC26.06■■□□□ 1.76
DDX56Q9NY93 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC26.05■■□□□ 1.76
DDX56Q9NY93 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC26.04■■□□□ 1.76
DDX56Q9NY93 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC26.04■■□□□ 1.76
DDX56Q9NY93 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC26.04■■□□□ 1.76
DDX56Q9NY93 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC26.04■■□□□ 1.76
DDX56Q9NY93 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
DDX56Q9NY93 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC26.04■■□□□ 1.76
DDX56Q9NY93 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC26.04■■□□□ 1.76
DDX56Q9NY93 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC26.03■■□□□ 1.76
DDX56Q9NY93 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC26.03■■□□□ 1.76
DDX56Q9NY93 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC26.03■■□□□ 1.76
DDX56Q9NY93 HGH1-207ENST00000628266 258 ntTSL 5 BASIC26.03■■□□□ 1.76
DDX56Q9NY93 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC26.02■■□□□ 1.76
DDX56Q9NY93 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
DDX56Q9NY93 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
DDX56Q9NY93 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC26.02■■□□□ 1.76
DDX56Q9NY93 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
DDX56Q9NY93 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC26.02■■□□□ 1.76
DDX56Q9NY93 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
DDX56Q9NY93 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
DDX56Q9NY93 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC26.01■■□□□ 1.75
DDX56Q9NY93 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC26.01■■□□□ 1.75
DDX56Q9NY93 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC26■■□□□ 1.75
DDX56Q9NY93 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC26■■□□□ 1.75
DDX56Q9NY93 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC26■■□□□ 1.75
DDX56Q9NY93 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC26■■□□□ 1.75
DDX56Q9NY93 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
DDX56Q9NY93 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC25.99■■□□□ 1.75
DDX56Q9NY93 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
DDX56Q9NY93 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
DDX56Q9NY93 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC25.99■■□□□ 1.75
DDX56Q9NY93 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC25.99■■□□□ 1.75
DDX56Q9NY93 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC25.99■■□□□ 1.75
DDX56Q9NY93 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
DDX56Q9NY93 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
DDX56Q9NY93 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
DDX56Q9NY93 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
DDX56Q9NY93 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC25.97■■□□□ 1.75
Retrieved 100 of 98,524 protein–RNA pairs in 79.8 ms