Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
SIX2Q9NPC8 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
SIX2Q9NPC8 HGH1-207ENST00000628266 258 ntTSL 5 BASIC27.19■■□□□ 1.94
SIX2Q9NPC8 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC27.19■■□□□ 1.94
SIX2Q9NPC8 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC27.19■■□□□ 1.94
SIX2Q9NPC8 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC27.19■■□□□ 1.94
SIX2Q9NPC8 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC27.18■■□□□ 1.94
SIX2Q9NPC8 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC27.18■■□□□ 1.94
SIX2Q9NPC8 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC27.18■■□□□ 1.94
SIX2Q9NPC8 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC27.17■■□□□ 1.94
SIX2Q9NPC8 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC27.17■■□□□ 1.94
SIX2Q9NPC8 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC27.17■■□□□ 1.94
SIX2Q9NPC8 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC27.16■■□□□ 1.94
SIX2Q9NPC8 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC27.16■■□□□ 1.94
SIX2Q9NPC8 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC27.16■■□□□ 1.94
SIX2Q9NPC8 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
SIX2Q9NPC8 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
SIX2Q9NPC8 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
SIX2Q9NPC8 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC27.14■■□□□ 1.94
SIX2Q9NPC8 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC27.14■■□□□ 1.94
SIX2Q9NPC8 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC27.13■■□□□ 1.93
SIX2Q9NPC8 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC27.13■■□□□ 1.93
SIX2Q9NPC8 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC27.13■■□□□ 1.93
SIX2Q9NPC8 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC27.13■■□□□ 1.93
SIX2Q9NPC8 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
SIX2Q9NPC8 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC27.12■■□□□ 1.93
SIX2Q9NPC8 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC27.12■■□□□ 1.93
SIX2Q9NPC8 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC27.12■■□□□ 1.93
SIX2Q9NPC8 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC27.11■■□□□ 1.93
SIX2Q9NPC8 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
SIX2Q9NPC8 PKM-203ENST00000389093 2279 ntTSL 5 BASIC27.1■■□□□ 1.93
SIX2Q9NPC8 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC27.1■■□□□ 1.93
SIX2Q9NPC8 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC27.1■■□□□ 1.93
SIX2Q9NPC8 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC27.1■■□□□ 1.93
SIX2Q9NPC8 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
SIX2Q9NPC8 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC27.1■■□□□ 1.93
SIX2Q9NPC8 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC27.1■■□□□ 1.93
SIX2Q9NPC8 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC27.09■■□□□ 1.93
SIX2Q9NPC8 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
SIX2Q9NPC8 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC27.09■■□□□ 1.93
SIX2Q9NPC8 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC27.09■■□□□ 1.93
SIX2Q9NPC8 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC27.09■■□□□ 1.93
SIX2Q9NPC8 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC27.09■■□□□ 1.93
SIX2Q9NPC8 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC27.09■■□□□ 1.93
SIX2Q9NPC8 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC27.09■■□□□ 1.93
SIX2Q9NPC8 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.93
SIX2Q9NPC8 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC27.08■■□□□ 1.93
SIX2Q9NPC8 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC27.08■■□□□ 1.93
SIX2Q9NPC8 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC27.08■■□□□ 1.93
SIX2Q9NPC8 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC27.07■■□□□ 1.92
SIX2Q9NPC8 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
SIX2Q9NPC8 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC27.06■■□□□ 1.92
SIX2Q9NPC8 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC27.06■■□□□ 1.92
SIX2Q9NPC8 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
SIX2Q9NPC8 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC27.06■■□□□ 1.92
SIX2Q9NPC8 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC27.06■■□□□ 1.92
SIX2Q9NPC8 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC27.06■■□□□ 1.92
SIX2Q9NPC8 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
SIX2Q9NPC8 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC27.05■■□□□ 1.92
SIX2Q9NPC8 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC27.05■■□□□ 1.92
SIX2Q9NPC8 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC27.05■■□□□ 1.92
SIX2Q9NPC8 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC27.04■■□□□ 1.92
SIX2Q9NPC8 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC27.04■■□□□ 1.92
SIX2Q9NPC8 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC27.04■■□□□ 1.92
SIX2Q9NPC8 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
SIX2Q9NPC8 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC27.03■■□□□ 1.92
SIX2Q9NPC8 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
SIX2Q9NPC8 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC27.02■■□□□ 1.92
SIX2Q9NPC8 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC27.02■■□□□ 1.92
SIX2Q9NPC8 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
SIX2Q9NPC8 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC27.02■■□□□ 1.92
SIX2Q9NPC8 LINC01971-201ENST00000617888 1048 ntBASIC27.02■■□□□ 1.92
SIX2Q9NPC8 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC27.02■■□□□ 1.92
SIX2Q9NPC8 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC27.01■■□□□ 1.92
SIX2Q9NPC8 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC27.01■■□□□ 1.92
SIX2Q9NPC8 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC27.01■■□□□ 1.91
SIX2Q9NPC8 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC27.01■■□□□ 1.91
SIX2Q9NPC8 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC27.01■■□□□ 1.91
SIX2Q9NPC8 CHML-204ENST00000638121 920 ntTSL 2 BASIC27.01■■□□□ 1.91
SIX2Q9NPC8 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC27■■□□□ 1.91
SIX2Q9NPC8 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC27■■□□□ 1.91
SIX2Q9NPC8 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC27■■□□□ 1.91
SIX2Q9NPC8 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC27■■□□□ 1.91
SIX2Q9NPC8 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC26.99■■□□□ 1.91
SIX2Q9NPC8 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC26.99■■□□□ 1.91
SIX2Q9NPC8 RPS2-210ENST00000530225 765 ntTSL 2 BASIC26.97■■□□□ 1.91
SIX2Q9NPC8 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC26.97■■□□□ 1.91
SIX2Q9NPC8 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC26.97■■□□□ 1.91
SIX2Q9NPC8 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC26.95■■□□□ 1.91
SIX2Q9NPC8 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC26.95■■□□□ 1.9
SIX2Q9NPC8 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC26.95■■□□□ 1.9
SIX2Q9NPC8 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC26.95■■□□□ 1.9
SIX2Q9NPC8 AL449106.1-201ENST00000608517 1980 ntBASIC26.95■■□□□ 1.9
SIX2Q9NPC8 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC26.95■■□□□ 1.9
SIX2Q9NPC8 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC26.95■■□□□ 1.9
SIX2Q9NPC8 DUX4L13-201ENST00000554103 1267 ntBASIC26.94■■□□□ 1.9
SIX2Q9NPC8 DUX4L15-201ENST00000611059 1267 ntBASIC26.94■■□□□ 1.9
SIX2Q9NPC8 DUX4L23-201ENST00000615195 1269 ntBASIC26.94■■□□□ 1.9
SIX2Q9NPC8 DUX4L24-201ENST00000617576 1269 ntBASIC26.94■■□□□ 1.9
SIX2Q9NPC8 DUX4L22-201ENST00000618238 1269 ntBASIC26.94■■□□□ 1.9
Retrieved 100 of 98,524 protein–RNA pairs in 18.9 ms