Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC25.22■■□□□ 1.63
TM9SF3Q9HD45 HYI-213ENST00000583037 1322 ntTSL 5 BASIC25.21■■□□□ 1.63
TM9SF3Q9HD45 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC25.21■■□□□ 1.63
TM9SF3Q9HD45 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC25.21■■□□□ 1.63
TM9SF3Q9HD45 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
TM9SF3Q9HD45 U85056.1-201ENST00000616429 682 ntBASIC25.21■■□□□ 1.63
TM9SF3Q9HD45 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
TM9SF3Q9HD45 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC25.21■■□□□ 1.63
TM9SF3Q9HD45 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC25.2■■□□□ 1.63
TM9SF3Q9HD45 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
TM9SF3Q9HD45 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC25.19■■□□□ 1.62
TM9SF3Q9HD45 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
TM9SF3Q9HD45 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC25.19■■□□□ 1.62
TM9SF3Q9HD45 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
TM9SF3Q9HD45 AC092296.2-201ENST00000589470 999 ntBASIC25.19■■□□□ 1.62
TM9SF3Q9HD45 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
TM9SF3Q9HD45 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
TM9SF3Q9HD45 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC25.18■■□□□ 1.62
TM9SF3Q9HD45 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC25.18■■□□□ 1.62
TM9SF3Q9HD45 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC25.17■■□□□ 1.62
TM9SF3Q9HD45 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC25.17■■□□□ 1.62
TM9SF3Q9HD45 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC25.16■■□□□ 1.62
TM9SF3Q9HD45 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
TM9SF3Q9HD45 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
TM9SF3Q9HD45 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
TM9SF3Q9HD45 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
TM9SF3Q9HD45 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
TM9SF3Q9HD45 AC018358.1-201ENST00000631079 1402 ntBASIC25.15■■□□□ 1.62
TM9SF3Q9HD45 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC25.15■■□□□ 1.62
TM9SF3Q9HD45 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC25.15■■□□□ 1.62
TM9SF3Q9HD45 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC25.15■■□□□ 1.62
TM9SF3Q9HD45 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC25.15■■□□□ 1.62
TM9SF3Q9HD45 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
TM9SF3Q9HD45 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC25.14■■□□□ 1.62
TM9SF3Q9HD45 AC139426.1-201ENST00000568218 2529 ntBASIC25.14■■□□□ 1.62
TM9SF3Q9HD45 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC25.14■■□□□ 1.62
TM9SF3Q9HD45 AL033527.3-201ENST00000566366 1196 ntBASIC25.14■■□□□ 1.62
TM9SF3Q9HD45 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
TM9SF3Q9HD45 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC25.13■■□□□ 1.61
TM9SF3Q9HD45 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC25.13■■□□□ 1.61
TM9SF3Q9HD45 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
TM9SF3Q9HD45 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
TM9SF3Q9HD45 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
TM9SF3Q9HD45 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
TM9SF3Q9HD45 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC25.12■■□□□ 1.61
TM9SF3Q9HD45 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC25.12■■□□□ 1.61
TM9SF3Q9HD45 ECEL1P2-201ENST00000461596 1295 ntBASIC25.12■■□□□ 1.61
TM9SF3Q9HD45 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
TM9SF3Q9HD45 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC25.12■■□□□ 1.61
TM9SF3Q9HD45 AC126177.7-201ENST00000547904 679 ntBASIC25.11■■□□□ 1.61
TM9SF3Q9HD45 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC25.11■■□□□ 1.61
TM9SF3Q9HD45 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC25.1■■□□□ 1.61
TM9SF3Q9HD45 MED25-210ENST00000612854 801 ntTSL 5 BASIC25.1■■□□□ 1.61
TM9SF3Q9HD45 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
TM9SF3Q9HD45 MED25-214ENST00000622402 642 ntTSL 5 BASIC25.1■■□□□ 1.61
TM9SF3Q9HD45 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
TM9SF3Q9HD45 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC25.1■■□□□ 1.61
TM9SF3Q9HD45 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
TM9SF3Q9HD45 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC25.09■■□□□ 1.61
TM9SF3Q9HD45 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC25.09■■□□□ 1.61
TM9SF3Q9HD45 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC25.09■■□□□ 1.61
TM9SF3Q9HD45 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC25.09■■□□□ 1.61
TM9SF3Q9HD45 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
TM9SF3Q9HD45 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC25.09■■□□□ 1.61
TM9SF3Q9HD45 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
TM9SF3Q9HD45 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
TM9SF3Q9HD45 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
TM9SF3Q9HD45 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC25.08■■□□□ 1.6
TM9SF3Q9HD45 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
TM9SF3Q9HD45 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC25.07■■□□□ 1.6
TM9SF3Q9HD45 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
TM9SF3Q9HD45 ST7-AS1-201ENST00000456775 1889 ntBASIC25.06■■□□□ 1.6
TM9SF3Q9HD45 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC25.06■■□□□ 1.6
TM9SF3Q9HD45 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
TM9SF3Q9HD45 KRT18P60-201ENST00000312876 1297 ntBASIC25.06■■□□□ 1.6
TM9SF3Q9HD45 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC25.06■■□□□ 1.6
TM9SF3Q9HD45 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC25.06■■□□□ 1.6
TM9SF3Q9HD45 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
TM9SF3Q9HD45 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
TM9SF3Q9HD45 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC25.05■■□□□ 1.6
TM9SF3Q9HD45 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC25.05■■□□□ 1.6
TM9SF3Q9HD45 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
TM9SF3Q9HD45 AP004833.2-201ENST00000532228 1454 ntBASIC25.04■■□□□ 1.6
TM9SF3Q9HD45 MOB2-207ENST00000614710 705 ntTSL 5 BASIC25.04■■□□□ 1.6
TM9SF3Q9HD45 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
TM9SF3Q9HD45 AL157400.5-201ENST00000507624 621 ntBASIC25.02■■□□□ 1.6
TM9SF3Q9HD45 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC25.02■■□□□ 1.6
TM9SF3Q9HD45 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC25.02■■□□□ 1.6
TM9SF3Q9HD45 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
TM9SF3Q9HD45 TSPY13P-201ENST00000338964 914 ntBASIC25.01■■□□□ 1.59
TM9SF3Q9HD45 AC004987.1-201ENST00000428627 508 ntBASIC25■■□□□ 1.59
TM9SF3Q9HD45 GFER-205ENST00000569451 517 ntTSL 5 BASIC25■■□□□ 1.59
TM9SF3Q9HD45 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC25■■□□□ 1.59
TM9SF3Q9HD45 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
TM9SF3Q9HD45 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC25■■□□□ 1.59
TM9SF3Q9HD45 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
TM9SF3Q9HD45 ATP5G2P3-201ENST00000429083 425 ntBASIC24.99■■□□□ 1.59
TM9SF3Q9HD45 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC24.99■■□□□ 1.59
TM9SF3Q9HD45 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
TM9SF3Q9HD45 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
Retrieved 100 of 98,524 protein–RNA pairs in 16.1 ms