Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC19.54■□□□□ 0.72
CCDC140Q96MF4 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC140Q96MF4 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC19.54■□□□□ 0.72
CCDC140Q96MF4 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC140Q96MF4 RNF166-209ENST00000567844 633 ntTSL 5 BASIC19.53■□□□□ 0.72
CCDC140Q96MF4 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC140Q96MF4 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC140Q96MF4 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC19.53■□□□□ 0.72
CCDC140Q96MF4 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC140Q96MF4 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC140Q96MF4 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC140Q96MF4 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC140Q96MF4 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC140Q96MF4 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC140Q96MF4 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
CCDC140Q96MF4 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC140Q96MF4 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC140Q96MF4 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
CCDC140Q96MF4 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC140Q96MF4 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC19.5■□□□□ 0.71
CCDC140Q96MF4 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC19.5■□□□□ 0.71
CCDC140Q96MF4 CHST11-202ENST00000546689 756 ntTSL 2 BASIC19.5■□□□□ 0.71
CCDC140Q96MF4 SHF-208ENST00000560734 1731 ntTSL 3 BASIC19.5■□□□□ 0.71
CCDC140Q96MF4 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC140Q96MF4 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC140Q96MF4 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC19.49■□□□□ 0.71
CCDC140Q96MF4 RPS2-210ENST00000530225 765 ntTSL 2 BASIC19.49■□□□□ 0.71
CCDC140Q96MF4 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
CCDC140Q96MF4 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC140Q96MF4 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC140Q96MF4 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC140Q96MF4 AGPS-202ENST00000409888 815 ntTSL 4 BASIC19.48■□□□□ 0.71
CCDC140Q96MF4 CR559946.2-201ENST00000623684 991 ntBASIC19.48■□□□□ 0.71
CCDC140Q96MF4 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC140Q96MF4 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC19.48■□□□□ 0.71
CCDC140Q96MF4 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC140Q96MF4 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC140Q96MF4 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC140Q96MF4 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
CCDC140Q96MF4 HES6-205ENST00000409356 528 ntTSL 2 BASIC19.47■□□□□ 0.71
CCDC140Q96MF4 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC140Q96MF4 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC140Q96MF4 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
CCDC140Q96MF4 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC140Q96MF4 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
CCDC140Q96MF4 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC140Q96MF4 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC140Q96MF4 MIR7108-201ENST00000614319 87 ntBASIC19.46■□□□□ 0.71
CCDC140Q96MF4 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC140Q96MF4 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC140Q96MF4 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC19.45■□□□□ 0.7
CCDC140Q96MF4 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
CCDC140Q96MF4 MACF1-219ENST00000484793 834 ntTSL 2 BASIC19.45■□□□□ 0.7
CCDC140Q96MF4 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
CCDC140Q96MF4 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC140Q96MF4 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
CCDC140Q96MF4 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC140Q96MF4 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC140Q96MF4 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
CCDC140Q96MF4 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
CCDC140Q96MF4 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC140Q96MF4 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC140Q96MF4 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC140Q96MF4 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC140Q96MF4 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC19.43■□□□□ 0.7
CCDC140Q96MF4 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC140Q96MF4 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC140Q96MF4 MIR3648-2-201ENST00000581792 180 ntBASIC19.43■□□□□ 0.7
CCDC140Q96MF4 MIR3648-1-201ENST00000615959 180 ntBASIC19.43■□□□□ 0.7
CCDC140Q96MF4 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC140Q96MF4 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
CCDC140Q96MF4 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
CCDC140Q96MF4 GDI1-215ENST00000630693 786 ntTSL 4 BASIC19.42■□□□□ 0.7
CCDC140Q96MF4 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC19.42■□□□□ 0.7
CCDC140Q96MF4 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC140Q96MF4 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC140Q96MF4 AL121749.1-202ENST00000609313 2153 ntBASIC19.42■□□□□ 0.7
CCDC140Q96MF4 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
CCDC140Q96MF4 AC008813.1-201ENST00000536597 885 ntBASIC19.41■□□□□ 0.7
CCDC140Q96MF4 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC140Q96MF4 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC140Q96MF4 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
CCDC140Q96MF4 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC140Q96MF4 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
CCDC140Q96MF4 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC19.39■□□□□ 0.7
CCDC140Q96MF4 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.7
CCDC140Q96MF4 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC19.39■□□□□ 0.69
CCDC140Q96MF4 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC140Q96MF4 AC016575.1-201ENST00000607026 382 ntBASIC19.39■□□□□ 0.69
CCDC140Q96MF4 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC140Q96MF4 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC19.39■□□□□ 0.69
CCDC140Q96MF4 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC140Q96MF4 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC19.38■□□□□ 0.69
CCDC140Q96MF4 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CCDC140Q96MF4 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC140Q96MF4 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC140Q96MF4 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
CCDC140Q96MF4 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
CCDC140Q96MF4 PVT1-219ENST00000523427 938 ntTSL 3 BASIC19.37■□□□□ 0.69
CCDC140Q96MF4 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 10.2 ms