Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC23.17■■□□□ 1.3
DEPDC4Q8N2C3 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
DEPDC4Q8N2C3 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC23.16■■□□□ 1.3
DEPDC4Q8N2C3 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
DEPDC4Q8N2C3 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC23.16■■□□□ 1.3
DEPDC4Q8N2C3 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
DEPDC4Q8N2C3 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
DEPDC4Q8N2C3 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC23.16■■□□□ 1.3
DEPDC4Q8N2C3 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC23.16■■□□□ 1.3
DEPDC4Q8N2C3 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC23.16■■□□□ 1.3
DEPDC4Q8N2C3 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC23.15■■□□□ 1.3
DEPDC4Q8N2C3 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
DEPDC4Q8N2C3 AC127502.1-201ENST00000399971 1502 ntBASIC23.15■■□□□ 1.3
DEPDC4Q8N2C3 MLEC-202ENST00000412616 841 ntTSL 3 BASIC23.15■■□□□ 1.3
DEPDC4Q8N2C3 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC23.15■■□□□ 1.3
DEPDC4Q8N2C3 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
DEPDC4Q8N2C3 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC23.14■■□□□ 1.29
DEPDC4Q8N2C3 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC23.13■■□□□ 1.29
DEPDC4Q8N2C3 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC23.13■■□□□ 1.29
DEPDC4Q8N2C3 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC23.12■■□□□ 1.29
DEPDC4Q8N2C3 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
DEPDC4Q8N2C3 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC23.12■■□□□ 1.29
DEPDC4Q8N2C3 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
DEPDC4Q8N2C3 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
DEPDC4Q8N2C3 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
DEPDC4Q8N2C3 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC23.11■■□□□ 1.29
DEPDC4Q8N2C3 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
DEPDC4Q8N2C3 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC23.11■■□□□ 1.29
DEPDC4Q8N2C3 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
DEPDC4Q8N2C3 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
DEPDC4Q8N2C3 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
DEPDC4Q8N2C3 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC23.1■■□□□ 1.29
DEPDC4Q8N2C3 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC23.09■■□□□ 1.29
DEPDC4Q8N2C3 AC091060.1-201ENST00000623524 1766 ntBASIC23.09■■□□□ 1.29
DEPDC4Q8N2C3 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
DEPDC4Q8N2C3 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC23.09■■□□□ 1.29
DEPDC4Q8N2C3 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC23.08■■□□□ 1.29
DEPDC4Q8N2C3 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
DEPDC4Q8N2C3 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC23.08■■□□□ 1.29
DEPDC4Q8N2C3 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
DEPDC4Q8N2C3 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC23.08■■□□□ 1.29
DEPDC4Q8N2C3 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC23.08■■□□□ 1.28
DEPDC4Q8N2C3 AC100797.4-201ENST00000631653 1827 ntBASIC23.08■■□□□ 1.28
DEPDC4Q8N2C3 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
DEPDC4Q8N2C3 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
DEPDC4Q8N2C3 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
DEPDC4Q8N2C3 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC23.07■■□□□ 1.28
DEPDC4Q8N2C3 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
DEPDC4Q8N2C3 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
DEPDC4Q8N2C3 AP002414.2-202ENST00000590929 1450 ntBASIC23.06■■□□□ 1.28
DEPDC4Q8N2C3 ABHD17AP4-201ENST00000411545 909 ntBASIC23.06■■□□□ 1.28
DEPDC4Q8N2C3 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
DEPDC4Q8N2C3 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC23.06■■□□□ 1.28
DEPDC4Q8N2C3 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC23.05■■□□□ 1.28
DEPDC4Q8N2C3 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
DEPDC4Q8N2C3 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC23.05■■□□□ 1.28
DEPDC4Q8N2C3 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC23.05■■□□□ 1.28
DEPDC4Q8N2C3 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
DEPDC4Q8N2C3 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
DEPDC4Q8N2C3 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
DEPDC4Q8N2C3 AC108673.1-201ENST00000510422 1159 ntBASIC23.04■■□□□ 1.28
DEPDC4Q8N2C3 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
DEPDC4Q8N2C3 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC23.03■■□□□ 1.28
DEPDC4Q8N2C3 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC23.03■■□□□ 1.28
DEPDC4Q8N2C3 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC23.03■■□□□ 1.28
DEPDC4Q8N2C3 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
DEPDC4Q8N2C3 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC23.02■■□□□ 1.28
DEPDC4Q8N2C3 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC23.02■■□□□ 1.28
DEPDC4Q8N2C3 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
DEPDC4Q8N2C3 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
DEPDC4Q8N2C3 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
DEPDC4Q8N2C3 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
DEPDC4Q8N2C3 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
DEPDC4Q8N2C3 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC23.01■■□□□ 1.27
DEPDC4Q8N2C3 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC23.01■■□□□ 1.27
DEPDC4Q8N2C3 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
DEPDC4Q8N2C3 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC23.01■■□□□ 1.27
DEPDC4Q8N2C3 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
DEPDC4Q8N2C3 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC23■■□□□ 1.27
DEPDC4Q8N2C3 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC23■■□□□ 1.27
DEPDC4Q8N2C3 CIB2-204ENST00000557846 934 ntTSL 3 BASIC23■■□□□ 1.27
DEPDC4Q8N2C3 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC23■■□□□ 1.27
DEPDC4Q8N2C3 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
DEPDC4Q8N2C3 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
DEPDC4Q8N2C3 AC145676.1-201ENST00000514988 2004 ntBASIC22.99■■□□□ 1.27
DEPDC4Q8N2C3 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC22.98■■□□□ 1.27
DEPDC4Q8N2C3 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
DEPDC4Q8N2C3 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC22.98■■□□□ 1.27
DEPDC4Q8N2C3 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
DEPDC4Q8N2C3 DUX4L29-201ENST00000425409 679 ntBASIC22.98■■□□□ 1.27
DEPDC4Q8N2C3 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC22.98■■□□□ 1.27
DEPDC4Q8N2C3 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC22.98■■□□□ 1.27
DEPDC4Q8N2C3 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC22.98■■□□□ 1.27
DEPDC4Q8N2C3 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC22.98■■□□□ 1.27
DEPDC4Q8N2C3 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC22.98■■□□□ 1.27
DEPDC4Q8N2C3 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC22.96■■□□□ 1.27
DEPDC4Q8N2C3 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC22.96■■□□□ 1.27
DEPDC4Q8N2C3 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC22.96■■□□□ 1.27
DEPDC4Q8N2C3 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC22.96■■□□□ 1.27
DEPDC4Q8N2C3 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
Retrieved 100 of 98,524 protein–RNA pairs in 54.2 ms