Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC23.17■■□□□ 1.3
DEPDC4Q8N2C3 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
DEPDC4Q8N2C3 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC23.16■■□□□ 1.3
DEPDC4Q8N2C3 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
DEPDC4Q8N2C3 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC23.16■■□□□ 1.3
DEPDC4Q8N2C3 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
DEPDC4Q8N2C3 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
DEPDC4Q8N2C3 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC23.16■■□□□ 1.3
DEPDC4Q8N2C3 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC23.16■■□□□ 1.3
DEPDC4Q8N2C3 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC23.16■■□□□ 1.3
DEPDC4Q8N2C3 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC23.15■■□□□ 1.3
DEPDC4Q8N2C3 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
DEPDC4Q8N2C3 AC127502.1-201ENST00000399971 1502 ntBASIC23.15■■□□□ 1.3
DEPDC4Q8N2C3 MLEC-202ENST00000412616 841 ntTSL 3 BASIC23.15■■□□□ 1.3
DEPDC4Q8N2C3 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC23.15■■□□□ 1.3
DEPDC4Q8N2C3 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
DEPDC4Q8N2C3 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC23.14■■□□□ 1.29
DEPDC4Q8N2C3 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC23.13■■□□□ 1.29
DEPDC4Q8N2C3 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC23.13■■□□□ 1.29
DEPDC4Q8N2C3 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC23.12■■□□□ 1.29
DEPDC4Q8N2C3 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
DEPDC4Q8N2C3 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC23.12■■□□□ 1.29
DEPDC4Q8N2C3 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
DEPDC4Q8N2C3 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
DEPDC4Q8N2C3 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
DEPDC4Q8N2C3 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC23.11■■□□□ 1.29
DEPDC4Q8N2C3 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
DEPDC4Q8N2C3 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC23.11■■□□□ 1.29
DEPDC4Q8N2C3 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
DEPDC4Q8N2C3 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
DEPDC4Q8N2C3 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
DEPDC4Q8N2C3 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC23.1■■□□□ 1.29
DEPDC4Q8N2C3 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC23.09■■□□□ 1.29
DEPDC4Q8N2C3 AC091060.1-201ENST00000623524 1766 ntBASIC23.09■■□□□ 1.29
DEPDC4Q8N2C3 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
DEPDC4Q8N2C3 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC23.09■■□□□ 1.29
DEPDC4Q8N2C3 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC23.08■■□□□ 1.29
DEPDC4Q8N2C3 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
DEPDC4Q8N2C3 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC23.08■■□□□ 1.29
DEPDC4Q8N2C3 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
DEPDC4Q8N2C3 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC23.08■■□□□ 1.29
DEPDC4Q8N2C3 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC23.08■■□□□ 1.28
DEPDC4Q8N2C3 AC100797.4-201ENST00000631653 1827 ntBASIC23.08■■□□□ 1.28
DEPDC4Q8N2C3 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
DEPDC4Q8N2C3 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
DEPDC4Q8N2C3 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
DEPDC4Q8N2C3 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC23.07■■□□□ 1.28
DEPDC4Q8N2C3 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
DEPDC4Q8N2C3 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
DEPDC4Q8N2C3 AP002414.2-202ENST00000590929 1450 ntBASIC23.06■■□□□ 1.28
DEPDC4Q8N2C3 ABHD17AP4-201ENST00000411545 909 ntBASIC23.06■■□□□ 1.28
DEPDC4Q8N2C3 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
DEPDC4Q8N2C3 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC23.06■■□□□ 1.28
DEPDC4Q8N2C3 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC23.05■■□□□ 1.28
DEPDC4Q8N2C3 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
DEPDC4Q8N2C3 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC23.05■■□□□ 1.28
DEPDC4Q8N2C3 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC23.05■■□□□ 1.28
DEPDC4Q8N2C3 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
DEPDC4Q8N2C3 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
DEPDC4Q8N2C3 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
DEPDC4Q8N2C3 AC108673.1-201ENST00000510422 1159 ntBASIC23.04■■□□□ 1.28
DEPDC4Q8N2C3 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
DEPDC4Q8N2C3 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC23.03■■□□□ 1.28
DEPDC4Q8N2C3 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC23.03■■□□□ 1.28
DEPDC4Q8N2C3 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC23.03■■□□□ 1.28
DEPDC4Q8N2C3 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
DEPDC4Q8N2C3 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC23.02■■□□□ 1.28
DEPDC4Q8N2C3 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC23.02■■□□□ 1.28
DEPDC4Q8N2C3 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
DEPDC4Q8N2C3 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
DEPDC4Q8N2C3 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
DEPDC4Q8N2C3 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
DEPDC4Q8N2C3 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
DEPDC4Q8N2C3 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC23.01■■□□□ 1.27
DEPDC4Q8N2C3 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC23.01■■□□□ 1.27
DEPDC4Q8N2C3 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
DEPDC4Q8N2C3 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC23.01■■□□□ 1.27
DEPDC4Q8N2C3 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
DEPDC4Q8N2C3 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC23■■□□□ 1.27
DEPDC4Q8N2C3 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC23■■□□□ 1.27
DEPDC4Q8N2C3 CIB2-204ENST00000557846 934 ntTSL 3 BASIC23■■□□□ 1.27
DEPDC4Q8N2C3 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC23■■□□□ 1.27
DEPDC4Q8N2C3 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
DEPDC4Q8N2C3 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
DEPDC4Q8N2C3 AC145676.1-201ENST00000514988 2004 ntBASIC22.99■■□□□ 1.27
DEPDC4Q8N2C3 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC22.98■■□□□ 1.27
DEPDC4Q8N2C3 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
DEPDC4Q8N2C3 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC22.98■■□□□ 1.27
DEPDC4Q8N2C3 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
DEPDC4Q8N2C3 DUX4L29-201ENST00000425409 679 ntBASIC22.98■■□□□ 1.27
DEPDC4Q8N2C3 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC22.98■■□□□ 1.27
DEPDC4Q8N2C3 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC22.98■■□□□ 1.27
DEPDC4Q8N2C3 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC22.98■■□□□ 1.27
DEPDC4Q8N2C3 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC22.98■■□□□ 1.27
DEPDC4Q8N2C3 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC22.98■■□□□ 1.27
DEPDC4Q8N2C3 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC22.96■■□□□ 1.27
DEPDC4Q8N2C3 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC22.96■■□□□ 1.27
DEPDC4Q8N2C3 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC22.96■■□□□ 1.27
DEPDC4Q8N2C3 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC22.96■■□□□ 1.27
DEPDC4Q8N2C3 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
Retrieved 100 of 98,524 protein–RNA pairs in 14.7 ms