Protein–RNA interactions for Protein: Q7Z3V4

UBE3B, Ubiquitin-protein ligase E3B, humanhuman

Predictions only

Length 1,068 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3BQ7Z3V4 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
UBE3BQ7Z3V4 RNF126P1-201ENST00000567452 1320 ntBASIC31.74■■■□□ 2.67
UBE3BQ7Z3V4 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
UBE3BQ7Z3V4 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
UBE3BQ7Z3V4 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
UBE3BQ7Z3V4 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
UBE3BQ7Z3V4 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC31.72■■■□□ 2.67
UBE3BQ7Z3V4 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC31.72■■■□□ 2.67
UBE3BQ7Z3V4 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC31.71■■■□□ 2.67
UBE3BQ7Z3V4 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
UBE3BQ7Z3V4 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC31.71■■■□□ 2.67
UBE3BQ7Z3V4 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC31.7■■■□□ 2.67
UBE3BQ7Z3V4 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC31.7■■■□□ 2.67
UBE3BQ7Z3V4 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC31.7■■■□□ 2.66
UBE3BQ7Z3V4 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC31.69■■■□□ 2.66
UBE3BQ7Z3V4 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC31.69■■■□□ 2.66
UBE3BQ7Z3V4 AC060814.1-201ENST00000554326 538 ntBASIC31.69■■■□□ 2.66
UBE3BQ7Z3V4 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC31.69■■■□□ 2.66
UBE3BQ7Z3V4 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC31.68■■■□□ 2.66
UBE3BQ7Z3V4 AC139426.1-201ENST00000568218 2529 ntBASIC31.68■■■□□ 2.66
UBE3BQ7Z3V4 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC31.67■■■□□ 2.66
UBE3BQ7Z3V4 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
UBE3BQ7Z3V4 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC31.66■■■□□ 2.66
UBE3BQ7Z3V4 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC31.66■■■□□ 2.66
UBE3BQ7Z3V4 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
UBE3BQ7Z3V4 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC31.65■■■□□ 2.66
UBE3BQ7Z3V4 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC31.65■■■□□ 2.66
UBE3BQ7Z3V4 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC31.65■■■□□ 2.66
UBE3BQ7Z3V4 MED25-210ENST00000612854 801 ntTSL 5 BASIC31.65■■■□□ 2.66
UBE3BQ7Z3V4 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC31.65■■■□□ 2.66
UBE3BQ7Z3V4 MED25-214ENST00000622402 642 ntTSL 5 BASIC31.65■■■□□ 2.66
UBE3BQ7Z3V4 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC31.64■■■□□ 2.66
UBE3BQ7Z3V4 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC31.64■■■□□ 2.66
UBE3BQ7Z3V4 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC31.64■■■□□ 2.66
UBE3BQ7Z3V4 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC31.64■■■□□ 2.66
UBE3BQ7Z3V4 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC31.63■■■□□ 2.65
UBE3BQ7Z3V4 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC31.63■■■□□ 2.65
UBE3BQ7Z3V4 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC31.63■■■□□ 2.65
UBE3BQ7Z3V4 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC31.63■■■□□ 2.65
UBE3BQ7Z3V4 AP002414.2-202ENST00000590929 1450 ntBASIC31.63■■■□□ 2.65
UBE3BQ7Z3V4 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC31.63■■■□□ 2.65
UBE3BQ7Z3V4 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
UBE3BQ7Z3V4 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
UBE3BQ7Z3V4 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC31.62■■■□□ 2.65
UBE3BQ7Z3V4 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC31.62■■■□□ 2.65
UBE3BQ7Z3V4 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC31.62■■■□□ 2.65
UBE3BQ7Z3V4 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC31.62■■■□□ 2.65
UBE3BQ7Z3V4 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
UBE3BQ7Z3V4 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC31.6■■■□□ 2.65
UBE3BQ7Z3V4 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC31.6■■■□□ 2.65
UBE3BQ7Z3V4 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
UBE3BQ7Z3V4 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC31.6■■■□□ 2.65
UBE3BQ7Z3V4 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC31.6■■■□□ 2.65
UBE3BQ7Z3V4 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
UBE3BQ7Z3V4 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
UBE3BQ7Z3V4 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
UBE3BQ7Z3V4 HES4-202ENST00000428771 1040 ntTSL 2 BASIC31.58■■■□□ 2.65
UBE3BQ7Z3V4 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC31.58■■■□□ 2.65
UBE3BQ7Z3V4 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC31.58■■■□□ 2.65
UBE3BQ7Z3V4 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC31.57■■■□□ 2.64
UBE3BQ7Z3V4 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC31.57■■■□□ 2.64
UBE3BQ7Z3V4 ABHD17AP5-201ENST00000580133 923 ntBASIC31.57■■■□□ 2.64
UBE3BQ7Z3V4 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC31.56■■■□□ 2.64
UBE3BQ7Z3V4 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC31.56■■■□□ 2.64
UBE3BQ7Z3V4 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
UBE3BQ7Z3V4 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC31.56■■■□□ 2.64
UBE3BQ7Z3V4 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC31.55■■■□□ 2.64
UBE3BQ7Z3V4 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC31.55■■■□□ 2.64
UBE3BQ7Z3V4 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC31.55■■■□□ 2.64
UBE3BQ7Z3V4 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC31.55■■■□□ 2.64
UBE3BQ7Z3V4 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC31.54■■■□□ 2.64
UBE3BQ7Z3V4 AC092296.2-201ENST00000589470 999 ntBASIC31.54■■■□□ 2.64
UBE3BQ7Z3V4 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC31.53■■■□□ 2.64
UBE3BQ7Z3V4 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
UBE3BQ7Z3V4 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC31.53■■■□□ 2.64
UBE3BQ7Z3V4 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
UBE3BQ7Z3V4 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC31.52■■■□□ 2.64
UBE3BQ7Z3V4 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.63
UBE3BQ7Z3V4 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC31.51■■■□□ 2.63
UBE3BQ7Z3V4 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC31.51■■■□□ 2.63
UBE3BQ7Z3V4 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.63
UBE3BQ7Z3V4 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC31.51■■■□□ 2.63
UBE3BQ7Z3V4 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
UBE3BQ7Z3V4 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC31.5■■■□□ 2.63
UBE3BQ7Z3V4 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC31.5■■■□□ 2.63
UBE3BQ7Z3V4 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC31.49■■■□□ 2.63
UBE3BQ7Z3V4 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC31.49■■■□□ 2.63
UBE3BQ7Z3V4 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC31.49■■■□□ 2.63
UBE3BQ7Z3V4 AC126177.7-201ENST00000547904 679 ntBASIC31.49■■■□□ 2.63
UBE3BQ7Z3V4 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
UBE3BQ7Z3V4 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC31.48■■■□□ 2.63
UBE3BQ7Z3V4 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC31.47■■■□□ 2.63
UBE3BQ7Z3V4 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
UBE3BQ7Z3V4 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC31.47■■■□□ 2.63
UBE3BQ7Z3V4 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC31.47■■■□□ 2.63
UBE3BQ7Z3V4 AL157400.5-201ENST00000507624 621 ntBASIC31.46■■■□□ 2.63
UBE3BQ7Z3V4 MOB2-207ENST00000614710 705 ntTSL 5 BASIC31.46■■■□□ 2.63
UBE3BQ7Z3V4 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
UBE3BQ7Z3V4 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC31.45■■■□□ 2.63
UBE3BQ7Z3V4 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC31.45■■■□□ 2.63
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms