Protein–RNA interactions for Protein: P52948

NUP98, Nuclear pore complex protein Nup98-Nup96, humanhuman

Predictions only

Length 1,817 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98P52948 GFER-205ENST00000569451 517 ntTSL 5 BASIC32■■■□□ 2.71
NUP98P52948 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC32■■■□□ 2.71
NUP98P52948 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC32■■■□□ 2.71
NUP98P52948 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC32■■■□□ 2.71
NUP98P52948 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC31.99■■■□□ 2.71
NUP98P52948 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
NUP98P52948 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC31.99■■■□□ 2.71
NUP98P52948 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC31.98■■■□□ 2.71
NUP98P52948 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC31.98■■■□□ 2.71
NUP98P52948 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC31.98■■■□□ 2.71
NUP98P52948 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC31.98■■■□□ 2.71
NUP98P52948 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC31.97■■■□□ 2.71
NUP98P52948 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC31.97■■■□□ 2.71
NUP98P52948 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC31.97■■■□□ 2.71
NUP98P52948 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC31.96■■■□□ 2.71
NUP98P52948 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC31.96■■■□□ 2.71
NUP98P52948 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC31.95■■■□□ 2.71
NUP98P52948 AL033527.3-201ENST00000566366 1196 ntBASIC31.95■■■□□ 2.7
NUP98P52948 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC31.94■■■□□ 2.7
NUP98P52948 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC31.94■■■□□ 2.7
NUP98P52948 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC31.93■■■□□ 2.7
NUP98P52948 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC31.93■■■□□ 2.7
NUP98P52948 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC31.93■■■□□ 2.7
NUP98P52948 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC31.93■■■□□ 2.7
NUP98P52948 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC31.92■■■□□ 2.7
NUP98P52948 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC31.92■■■□□ 2.7
NUP98P52948 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC31.92■■■□□ 2.7
NUP98P52948 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC31.91■■■□□ 2.7
NUP98P52948 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC31.91■■■□□ 2.7
NUP98P52948 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC31.9■■■□□ 2.7
NUP98P52948 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC31.9■■■□□ 2.7
NUP98P52948 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC31.89■■■□□ 2.7
NUP98P52948 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.7
NUP98P52948 ECEL1P2-201ENST00000461596 1295 ntBASIC31.89■■■□□ 2.69
NUP98P52948 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC31.89■■■□□ 2.69
NUP98P52948 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC31.88■■■□□ 2.69
NUP98P52948 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC31.88■■■□□ 2.69
NUP98P52948 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
NUP98P52948 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC31.87■■■□□ 2.69
NUP98P52948 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC31.87■■■□□ 2.69
NUP98P52948 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC31.87■■■□□ 2.69
NUP98P52948 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC31.86■■■□□ 2.69
NUP98P52948 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC31.86■■■□□ 2.69
NUP98P52948 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC31.86■■■□□ 2.69
NUP98P52948 AC126177.7-201ENST00000547904 679 ntBASIC31.86■■■□□ 2.69
NUP98P52948 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC31.86■■■□□ 2.69
NUP98P52948 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC31.85■■■□□ 2.69
NUP98P52948 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC31.85■■■□□ 2.69
NUP98P52948 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC31.85■■■□□ 2.69
NUP98P52948 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC31.85■■■□□ 2.69
NUP98P52948 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC31.84■■■□□ 2.69
NUP98P52948 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC31.84■■■□□ 2.69
NUP98P52948 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC31.83■■■□□ 2.69
NUP98P52948 AC025884.2-201ENST00000553429 711 ntBASIC31.82■■■□□ 2.68
NUP98P52948 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC31.81■■■□□ 2.68
NUP98P52948 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
NUP98P52948 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC31.81■■■□□ 2.68
NUP98P52948 AC007029.1-201ENST00000604183 313 ntBASIC31.81■■■□□ 2.68
NUP98P52948 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC31.81■■■□□ 2.68
NUP98P52948 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC31.8■■■□□ 2.68
NUP98P52948 ABCB10P3-201ENST00000561950 2166 ntBASIC31.8■■■□□ 2.68
NUP98P52948 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC31.8■■■□□ 2.68
NUP98P52948 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
NUP98P52948 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC31.79■■■□□ 2.68
NUP98P52948 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
NUP98P52948 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC31.79■■■□□ 2.68
NUP98P52948 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC31.79■■■□□ 2.68
NUP98P52948 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC31.79■■■□□ 2.68
NUP98P52948 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC31.79■■■□□ 2.68
NUP98P52948 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC31.79■■■□□ 2.68
NUP98P52948 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC31.77■■■□□ 2.68
NUP98P52948 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC31.77■■■□□ 2.68
NUP98P52948 TSPY13P-201ENST00000338964 914 ntBASIC31.77■■■□□ 2.68
NUP98P52948 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC31.76■■■□□ 2.68
NUP98P52948 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC31.76■■■□□ 2.67
NUP98P52948 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC31.76■■■□□ 2.67
NUP98P52948 REST-210ENST00000638187 1334 ntTSL 5 BASIC31.76■■■□□ 2.67
NUP98P52948 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC31.76■■■□□ 2.67
NUP98P52948 AL139393.2-201ENST00000608721 2025 ntBASIC31.75■■■□□ 2.67
NUP98P52948 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC31.75■■■□□ 2.67
NUP98P52948 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
NUP98P52948 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC31.75■■■□□ 2.67
NUP98P52948 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC31.75■■■□□ 2.67
NUP98P52948 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC31.75■■■□□ 2.67
NUP98P52948 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC31.75■■■□□ 2.67
NUP98P52948 AC004987.1-201ENST00000428627 508 ntBASIC31.75■■■□□ 2.67
NUP98P52948 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC31.73■■■□□ 2.67
NUP98P52948 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
NUP98P52948 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC31.73■■■□□ 2.67
NUP98P52948 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC31.73■■■□□ 2.67
NUP98P52948 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC31.73■■■□□ 2.67
NUP98P52948 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC31.72■■■□□ 2.67
NUP98P52948 AL592293.1-201ENST00000502889 1188 ntBASIC31.72■■■□□ 2.67
NUP98P52948 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC31.72■■■□□ 2.67
NUP98P52948 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC31.72■■■□□ 2.67
NUP98P52948 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
NUP98P52948 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC31.72■■■□□ 2.67
NUP98P52948 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC31.72■■■□□ 2.67
NUP98P52948 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC31.71■■■□□ 2.67
NUP98P52948 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC31.71■■■□□ 2.67
Retrieved 100 of 98,524 protein–RNA pairs in 44.1 ms