Protein–RNA interactions for Protein: P00558

PGK1, Phosphoglycerate kinase 1, humanhuman

Predictions only

Length 417 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PGK1P00558 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC28.45■■■□□ 2.14
PGK1P00558 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC28.44■■■□□ 2.14
PGK1P00558 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC28.44■■■□□ 2.14
PGK1P00558 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC28.43■■■□□ 2.14
PGK1P00558 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC28.42■■■□□ 2.14
PGK1P00558 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC28.42■■■□□ 2.14
PGK1P00558 DUX4L18-201ENST00000553347 1267 ntBASIC28.42■■■□□ 2.14
PGK1P00558 AC129492.7-201ENST00000622992 756 ntBASIC28.42■■■□□ 2.14
PGK1P00558 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC28.41■■■□□ 2.14
PGK1P00558 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC28.41■■■□□ 2.14
PGK1P00558 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC28.41■■■□□ 2.14
PGK1P00558 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC28.41■■■□□ 2.14
PGK1P00558 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC28.41■■■□□ 2.14
PGK1P00558 AC007029.1-201ENST00000604183 313 ntBASIC28.41■■■□□ 2.14
PGK1P00558 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC28.41■■■□□ 2.14
PGK1P00558 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
PGK1P00558 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC28.4■■■□□ 2.14
PGK1P00558 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC28.39■■■□□ 2.14
PGK1P00558 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC28.39■■■□□ 2.14
PGK1P00558 AL592293.1-201ENST00000502889 1188 ntBASIC28.38■■■□□ 2.13
PGK1P00558 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC28.38■■■□□ 2.13
PGK1P00558 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
PGK1P00558 AC009831.1-201ENST00000580420 1582 ntBASIC28.37■■■□□ 2.13
PGK1P00558 HES4-204ENST00000484667 667 ntTSL 3 BASIC28.37■■■□□ 2.13
PGK1P00558 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC28.37■■■□□ 2.13
PGK1P00558 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC28.37■■■□□ 2.13
PGK1P00558 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
PGK1P00558 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC28.37■■■□□ 2.13
PGK1P00558 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
PGK1P00558 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC28.36■■■□□ 2.13
PGK1P00558 AC133552.2-201ENST00000619106 1032 ntBASIC28.36■■■□□ 2.13
PGK1P00558 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC28.36■■■□□ 2.13
PGK1P00558 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
PGK1P00558 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC28.35■■■□□ 2.13
PGK1P00558 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
PGK1P00558 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC28.35■■■□□ 2.13
PGK1P00558 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC28.35■■■□□ 2.13
PGK1P00558 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC28.35■■■□□ 2.13
PGK1P00558 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC28.34■■■□□ 2.13
PGK1P00558 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC28.34■■■□□ 2.13
PGK1P00558 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC28.34■■■□□ 2.13
PGK1P00558 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC28.34■■■□□ 2.13
PGK1P00558 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC28.33■■■□□ 2.13
PGK1P00558 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC28.33■■■□□ 2.13
PGK1P00558 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC28.33■■■□□ 2.13
PGK1P00558 REST-210ENST00000638187 1334 ntTSL 5 BASIC28.33■■■□□ 2.13
PGK1P00558 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
PGK1P00558 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC28.32■■■□□ 2.12
PGK1P00558 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC28.32■■■□□ 2.12
PGK1P00558 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC28.32■■■□□ 2.12
PGK1P00558 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
PGK1P00558 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
PGK1P00558 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
PGK1P00558 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC28.31■■■□□ 2.12
PGK1P00558 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
PGK1P00558 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC28.3■■■□□ 2.12
PGK1P00558 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
PGK1P00558 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC28.3■■■□□ 2.12
PGK1P00558 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC28.29■■■□□ 2.12
PGK1P00558 SMPD5-203ENST00000639008 1464 ntBASIC28.29■■■□□ 2.12
PGK1P00558 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
PGK1P00558 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC28.29■■■□□ 2.12
PGK1P00558 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC28.29■■■□□ 2.12
PGK1P00558 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
PGK1P00558 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
PGK1P00558 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC28.27■■■□□ 2.12
PGK1P00558 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC28.27■■■□□ 2.12
PGK1P00558 AL359258.2-201ENST00000564063 1566 ntBASIC28.27■■■□□ 2.12
PGK1P00558 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
PGK1P00558 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
PGK1P00558 AC100797.4-201ENST00000631653 1827 ntBASIC28.26■■■□□ 2.11
PGK1P00558 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC28.25■■■□□ 2.11
PGK1P00558 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC28.25■■■□□ 2.11
PGK1P00558 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC28.25■■■□□ 2.11
PGK1P00558 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
PGK1P00558 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC28.24■■■□□ 2.11
PGK1P00558 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC28.24■■■□□ 2.11
PGK1P00558 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
PGK1P00558 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC28.24■■■□□ 2.11
PGK1P00558 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC28.24■■■□□ 2.11
PGK1P00558 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC28.24■■■□□ 2.11
PGK1P00558 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC28.24■■■□□ 2.11
PGK1P00558 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC28.24■■■□□ 2.11
PGK1P00558 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC28.23■■■□□ 2.11
PGK1P00558 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC28.23■■■□□ 2.11
PGK1P00558 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC28.23■■■□□ 2.11
PGK1P00558 AC026202.3-201ENST00000600805 1127 ntBASIC28.23■■■□□ 2.11
PGK1P00558 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC28.23■■■□□ 2.11
PGK1P00558 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC28.22■■■□□ 2.11
PGK1P00558 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC28.22■■■□□ 2.11
PGK1P00558 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC28.21■■■□□ 2.11
PGK1P00558 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC28.2■■■□□ 2.11
PGK1P00558 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
PGK1P00558 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC28.2■■■□□ 2.1
PGK1P00558 AL035685.1-201ENST00000636663 812 ntBASIC28.2■■■□□ 2.1
PGK1P00558 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC28.2■■■□□ 2.1
PGK1P00558 ST7-AS1-201ENST00000456775 1889 ntBASIC28.19■■■□□ 2.1
PGK1P00558 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC28.19■■■□□ 2.1
PGK1P00558 AL451085.2-201ENST00000605085 799 ntBASIC28.19■■■□□ 2.1
PGK1P00558 AP004833.2-201ENST00000532228 1454 ntBASIC28.19■■■□□ 2.1
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms