RNA–Protein interactions for RNA: YBR275C

RIF1, Transcript of Protein that binds to the Rap1p C-terminus, yeast

Gene RIF1, Length 5,751 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RIF1	YBR275C	MTC1	P47018	478 aa	Known RBP	4.97	□□□□□ -1.61
RIF1	YBR275C	RQC2	Q12532	1038 aa	Known RBP	4.41	□□□□□ -1.7
RIF1	YBR275C	TFA1	P36100	482 aa		4.34	□□□□□ -1.71
RIF1	YBR275C	NSR1	P27476	414 aa	Known RBP RIP-Chip data	4.32	□□□□□ -1.72	not detected
RIF1	YBR275C	SAS10	Q12136	610 aa	Predicted RBP	4.28	□□□□□ -1.72
RIF1	YBR275C	LEU3	P08638	886 aa		4.17	□□□□□ -1.74
RIF1	YBR275C	YTA7	P40340	1379 aa		4.15	□□□□□ -1.75
RIF1	YBR275C	SCT1	P32784	759 aa		4.14	□□□□□ -1.75
RIF1	YBR275C	NAB3	P38996	802 aa	Known RBP RIP-Chip data	4.14	□□□□□ -1.75	not detected
RIF1	YBR275C	RSE1	Q04693	1361 aa	Known RBP	4.13	□□□□□ -1.75
RIF1	YBR275C	DRS1	P32892	752 aa	Known RBP	4.13	□□□□□ -1.75
RIF1	YBR275C	NAP1	P25293	417 aa	Known RBP	4.12	□□□□□ -1.75
RIF1	YBR275C	ABP1	P15891	592 aa	Known RBP	4.11	□□□□□ -1.75
RIF1	YBR275C	YJL181W	P46987	611 aa		4.06	□□□□□ -1.76
RIF1	YBR275C	IFH1	P39520	1085 aa		4.04	□□□□□ -1.76
RIF1	YBR275C	FPR4	Q06205	392 aa	Predicted RBP	4.04	□□□□□ -1.76
RIF1	YBR275C	ENP1	P38333	483 aa	Known RBP	4.04	□□□□□ -1.76
RIF1	YBR275C	CLB5	P30283	435 aa		4.01	□□□□□ -1.77
RIF1	YBR275C	MIF2	P35201	549 aa		3.99	□□□□□ -1.77
RIF1	YBR275C	SIS2	P36024	562 aa		3.98	□□□□□ -1.77
RIF1	YBR275C	POL5	P39985	1022 aa	Known RBP	3.97	□□□□□ -1.77
RIF1	YBR275C	RTT106	P40161	455 aa		3.95	□□□□□ -1.78
RIF1	YBR275C	SEN54	Q02825	467 aa	Predicted RBP	3.95	□□□□□ -1.78
RIF1	YBR275C	RRT14	P40470	206 aa		3.93	□□□□□ -1.78
RIF1	YBR275C	YPR148C	Q06523	435 aa		3.93	□□□□□ -1.78
RIF1	YBR275C	UBP1	P25037	809 aa		3.92	□□□□□ -1.78
RIF1	YBR275C	AVT3	P36062	692 aa		3.91	□□□□□ -1.78
RIF1	YBR275C	NOP53	Q12080	455 aa	Known RBP	3.91	□□□□□ -1.78
RIF1	YBR275C	SPT21	P35209	758 aa		3.91	□□□□□ -1.78
RIF1	YBR275C	PAF1	P38351	445 aa		3.9	□□□□□ -1.78
RIF1	YBR275C	URN1	Q06525	465 aa	Known RBP	3.9	□□□□□ -1.79
RIF1	YBR275C	UBP10	P53874	792 aa	Predicted RBP	3.88	□□□□□ -1.79
RIF1	YBR275C	PSD2	P53037	1138 aa	Known RBP	3.87	□□□□□ -1.79
RIF1	YBR275C	SVF1	Q05515	481 aa		3.87	□□□□□ -1.79
RIF1	YBR275C	PRI1	P10363	409 aa		3.86	□□□□□ -1.79
RIF1	YBR275C	BFR2	Q06631	534 aa	Known RBP	3.86	□□□□□ -1.79
RIF1	YBR275C	ENV11	P53246	860 aa		3.85	□□□□□ -1.79
RIF1	YBR275C	MRX12	P47084	519 aa		3.84	□□□□□ -1.79
RIF1	YBR275C	TAF7	Q05021	590 aa		3.82	□□□□□ -1.8
RIF1	YBR275C	CSE1	P33307	960 aa		3.81	□□□□□ -1.8
RIF1	YBR275C	CKB1	P43639	278 aa		3.81	□□□□□ -1.8
RIF1	YBR275C	COG8	Q04632	607 aa		3.8	□□□□□ -1.8
RIF1	YBR275C	HUL5	P53119	910 aa		3.79	□□□□□ -1.8
RIF1	YBR275C	AIM7	Q12156	149 aa		3.78	□□□□□ -1.8
RIF1	YBR275C	PRP40	P33203	583 aa	Known RBP	3.76	□□□□□ -1.81
RIF1	YBR275C	DIP2	Q12220	943 aa	Predicted RBP	3.74	□□□□□ -1.81
RIF1	YBR275C	TIF4632	P39936	914 aa	Known RBP	3.73	□□□□□ -1.81
RIF1	YBR275C	LEO1	P38439	464 aa		3.73	□□□□□ -1.81
RIF1	YBR275C	SPT5	P27692	1063 aa	Known RBP	3.72	□□□□□ -1.81
RIF1	YBR275C	INO80	P53115	1489 aa		3.72	□□□□□ -1.81
RIF1	YBR275C	KEX1	P09620	729 aa		3.71	□□□□□ -1.82
RIF1	YBR275C	ASF1	P32447	279 aa		3.71	□□□□□ -1.82
RIF1	YBR275C	ENP2	P48234	707 aa	Known RBP	3.71	□□□□□ -1.82
RIF1	YBR275C	NOP7	P53261	605 aa	Known RBP	3.71	□□□□□ -1.82
RIF1	YBR275C	YFR006W	P43590	535 aa		3.71	□□□□□ -1.82
RIF1	YBR275C	TAF5	P38129	798 aa		3.7	□□□□□ -1.82
RIF1	YBR275C	HPC2	Q01448	625 aa		3.7	□□□□□ -1.82
RIF1	YBR275C	SAP155	P43612	1002 aa		3.69	□□□□□ -1.82
RIF1	YBR275C	LAM6	Q08001	693 aa		3.69	□□□□□ -1.82
RIF1	YBR275C	UGA2	P38067	497 aa		3.68	□□□□□ -1.82
RIF1	YBR275C	FUN12	P39730	1002 aa	Known RBP	3.68	□□□□□ -1.82
RIF1	YBR275C	UTP13	Q05946	817 aa	Known RBP	3.68	□□□□□ -1.82
RIF1	YBR275C	NOP8	Q08287	484 aa	Predicted RBP	3.68	□□□□□ -1.82
RIF1	YBR275C	YGL081W	P53156	320 aa		3.68	□□□□□ -1.82
RIF1	YBR275C	SUP35	P05453	685 aa	Known RBP	3.67	□□□□□ -1.82
RIF1	YBR275C	FPR3	P38911	411 aa	Known RBP	3.65	□□□□□ -1.82
RIF1	YBR275C	RRD1	P40454	393 aa	Known RBP	3.65	□□□□□ -1.82
RIF1	YBR275C	ZDS2	P54786	942 aa		3.65	□□□□□ -1.83
RIF1	YBR275C	RAD54	P32863	898 aa		3.64	□□□□□ -1.83
RIF1	YBR275C	RLF2	Q12495	606 aa		3.64	□□□□□ -1.83
RIF1	YBR275C	RPP2B	P02400	110 aa	Known RBP	3.63	□□□□□ -1.83
RIF1	YBR275C	CLN2	P20438	545 aa		3.63	□□□□□ -1.83
RIF1	YBR275C	RRP14	P36080	434 aa	Known RBP	3.63	□□□□□ -1.83
RIF1	YBR275C	YRB30	P53107	440 aa	Predicted RBP	3.63	□□□□□ -1.83
RIF1	YBR275C	TPD3	P31383	635 aa		3.62	□□□□□ -1.83
RIF1	YBR275C	MNN4	P36044	1178 aa		3.62	□□□□□ -1.83
RIF1	YBR275C	VAS1	P07806	1104 aa	Known RBP	3.61	□□□□□ -1.83
RIF1	YBR275C	MCM6	P53091	1017 aa	Known RBP	3.61	□□□□□ -1.83
RIF1	YBR275C	FKH1	P40466	484 aa		3.61	□□□□□ -1.83
RIF1	YBR275C	KGD2	P19262	463 aa	Predicted RBP	3.6	□□□□□ -1.83
RIF1	YBR275C	IRC3	Q06683	689 aa		3.6	□□□□□ -1.83
RIF1	YBR275C	PRP45	P28004	379 aa	Predicted RBP	3.59	□□□□□ -1.83
RIF1	YBR275C	SPA2	P23201	1466 aa	Known RBP	3.59	□□□□□ -1.83
RIF1	YBR275C	SMC1	P32908	1225 aa		3.59	□□□□□ -1.84
RIF1	YBR275C	YNL035C	P53962	389 aa	Known RBP	3.59	□□□□□ -1.84
RIF1	YBR275C	PKH1	Q03407	766 aa		3.58	□□□□□ -1.84
RIF1	YBR275C	RGD1	P38339	666 aa		3.58	□□□□□ -1.84
RIF1	YBR275C	ATG1	P53104	897 aa		3.58	□□□□□ -1.84
RIF1	YBR275C	ALD3	P54114	506 aa		3.58	□□□□□ -1.84
RIF1	YBR275C	RNR4	P49723	345 aa	Known RBP	3.57	□□□□□ -1.84
RIF1	YBR275C	RMD1	Q03441	430 aa		3.57	□□□□□ -1.84
RIF1	YBR275C	YKR023W	P36119	530 aa	Known RBP	3.57	□□□□□ -1.84
RIF1	YBR275C	PAP2	P53632	584 aa	Known RBP	3.57	□□□□□ -1.84
RIF1	YBR275C	ARP8	Q12386	881 aa	Known RBP RIP-Chip data	3.57	□□□□□ -1.84	not detected
RIF1	YBR275C	SSA1	P10591	642 aa	Known RBP	3.56	□□□□□ -1.84
RIF1	YBR275C	ALD2	P47771	506 aa		3.56	□□□□□ -1.84
RIF1	YBR275C	YBL036C	P38197	257 aa		3.56	□□□□□ -1.84
RIF1	YBR275C	RSC30	P38781	883 aa		3.56	□□□□□ -1.84
RIF1	YBR275C	KRI1	P42846	591 aa	Known RBP	3.56	□□□□□ -1.84
RIF1	YBR275C	RIX7	Q07844	837 aa	Known RBP	3.56	□□□□□ -1.84

Retrieved 100 of 5,963 RNA–protein pairs in 11.5 ms