RNA–Protein interactions for RNA: ENST00000639496.1

KCNQ3-208, Transcript of potassium voltage-gated channel subfamily Q member 3, humanhuman

TSL 5

Gene KCNQ3, Length 4,943 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KCNQ3-208ENST00000639496 DCAF8L2P0C7V8 631 aa18.15■□□□□ 0.5
KCNQ3-208ENST00000639496 SUPT5HO00267 1087 aaKnown RBP16.88■□□□□ 0.29
KCNQ3-208ENST00000639496 NISCHQ9Y2I1 1504 aa16.86■□□□□ 0.29
KCNQ3-208ENST00000639496 SHROOM4Q9ULL8 1493 aa16.49■□□□□ 0.23
KCNQ3-208ENST00000639496 FAM9AQ8IZU1 332 aaPredicted RBP16.42■□□□□ 0.22
KCNQ3-208ENST00000639496 APLP2Q06481 763 aa16.35■□□□□ 0.21
KCNQ3-208ENST00000639496 EHMT2Q96KQ7 1210 aa16.29■□□□□ 0.2
KCNQ3-208ENST00000639496 PELP1Q8IZL8 1130 aaKnown RBP16.01■□□□□ 0.15
KCNQ3-208ENST00000639496 ATP1B4Q9UN42 357 aaPredicted RBP15.75■□□□□ 0.11
KCNQ3-208ENST00000639496 RANGAP1P46060 587 aaPredicted RBP15.74■□□□□ 0.11
KCNQ3-208ENST00000639496 TRIM41Q8WV44 630 aa15.72■□□□□ 0.11
KCNQ3-208ENST00000639496 TTBK1Q5TCY1 1321 aaPredicted RBP15.71■□□□□ 0.11
KCNQ3-208ENST00000639496 UBTFP17480 764 aaKnown RBP15.62■□□□□ 0.09
KCNQ3-208ENST00000639496 PCGF6Q9BYE7 350 aa15.56■□□□□ 0.08
KCNQ3-208ENST00000639496 CCER1Q8TC90 406 aaPredicted RBP15.42■□□□□ 0.06
KCNQ3-208ENST00000639496 ZEB1P37275 1124 aaPredicted RBP15.41■□□□□ 0.06
KCNQ3-208ENST00000639496 MYT1LQ9UL68 1186 aa15.36■□□□□ 0.05
KCNQ3-208ENST00000639496 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.32■□□□□ 0.04
KCNQ3-208ENST00000639496 HNRNPUL2Q1KMD3 747 aaKnown RBP15.32■□□□□ 0.04
KCNQ3-208ENST00000639496 CENPBP07199 599 aaPredicted RBP15.31■□□□□ 0.04
KCNQ3-208ENST00000639496 ERICH6Q7L0X2 663 aa15.21■□□□□ 0.03
KCNQ3-208ENST00000639496 NEFLP07196 543 aa15.16■□□□□ 0.02
KCNQ3-208ENST00000639496 ITGAEP38570 1179 aa15.04■□□□□ -0
KCNQ3-208ENST00000639496 PPARGC1BQ86YN6 1023 aaKnown RBP14.99□□□□□ -0.01
KCNQ3-208ENST00000639496 POLR3GLQ9BT43 218 aa14.97□□□□□ -0.01
KCNQ3-208ENST00000639496 CHIC1Q5VXU3 224 aa14.91□□□□□ -0.02
KCNQ3-208ENST00000639496 TRIM26Q12899 539 aaPredicted RBP14.9□□□□□ -0.02
KCNQ3-208ENST00000639496 PABPN1Q86U42 306 aaKnown RBP eCLIP14.89□□□□□ -0.03
KCNQ3-208ENST00000639496 ABCC9O60706 1549 aa14.88□□□□□ -0.03
KCNQ3-208ENST00000639496 YTHDC1Q96MU7 727 aaKnown RBP14.87□□□□□ -0.03
KCNQ3-208ENST00000639496 SLC4A1APQ9BWU0 796 aaKnown RBP14.84□□□□□ -0.03
KCNQ3-208ENST00000639496 DAXXQ9UER7 740 aaPredicted RBP14.77□□□□□ -0.04
KCNQ3-208ENST00000639496 FBLN2P98095 1184 aa14.75□□□□□ -0.05
KCNQ3-208ENST00000639496 CNGB1Q14028 1251 aaPredicted RBP14.71□□□□□ -0.05
KCNQ3-208ENST00000639496 FAM50AQ14320 339 aaKnown RBP14.7□□□□□ -0.06
KCNQ3-208ENST00000639496 LOC105371045A0A1W2PR82 267 aa14.7□□□□□ -0.06
KCNQ3-208ENST00000639496 TRIM52Q96A61 297 aa14.68□□□□□ -0.06
KCNQ3-208ENST00000639496 HRCP23327 699 aa14.56□□□□□ -0.08
KCNQ3-208ENST00000639496 CLSPNQ9HAW4 1339 aa14.52□□□□□ -0.08
KCNQ3-208ENST00000639496 BCANQ96GW7 911 aa14.51□□□□□ -0.09
KCNQ3-208ENST00000639496 ESF1Q9H501 851 aaKnown RBP14.49□□□□□ -0.09
KCNQ3-208ENST00000639496 CDK11AQ9UQ88 783 aaPredicted RBP14.49□□□□□ -0.09
KCNQ3-208ENST00000639496 ZNF326Q5BKZ1 582 aaKnown RBP14.47□□□□□ -0.09
KCNQ3-208ENST00000639496 NEUROD1Q13562 356 aa14.45□□□□□ -0.1
KCNQ3-208ENST00000639496 NPM1P06748 294 aaKnown RBP eCLIP14.45□□□□□ -0.1
KCNQ3-208ENST00000639496 NEFMP07197 916 aa14.43□□□□□ -0.1
KCNQ3-208ENST00000639496 ZBTB47Q9UFB7 747 aaPredicted RBP14.43□□□□□ -0.1
KCNQ3-208ENST00000639496 P3H3Q8IVL6 736 aa14.36□□□□□ -0.11
KCNQ3-208ENST00000639496 ZNF316A6NFI3 1004 aaPredicted RBP14.36□□□□□ -0.11
KCNQ3-208ENST00000639496 ARID3CA6NKF2 412 aa14.36□□□□□ -0.11
KCNQ3-208ENST00000639496 ZNF777Q9ULD5 760 aaPredicted RBP14.35□□□□□ -0.11
KCNQ3-208ENST00000639496 SLC24A1O60721 1099 aa14.35□□□□□ -0.11
KCNQ3-208ENST00000639496 CSRNP3Q8WYN3 585 aa14.35□□□□□ -0.11
KCNQ3-208ENST00000639496 MYT1Q01538 1121 aa14.32□□□□□ -0.12
KCNQ3-208ENST00000639496 ANP32CO43423 234 aa14.31□□□□□ -0.12
KCNQ3-208ENST00000639496 DIEXFQ68CQ4 756 aaKnown RBP14.31□□□□□ -0.12
KCNQ3-208ENST00000639496 STAG3Q9UJ98 1225 aa14.3□□□□□ -0.12
KCNQ3-208ENST00000639496 RTL5Q5HYW3 569 aaPredicted RBP14.24□□□□□ -0.13
KCNQ3-208ENST00000639496 CANXP27824 592 aaKnown RBP14.22□□□□□ -0.13
KCNQ3-208ENST00000639496 CHGAP10645 457 aaKnown RBP14.22□□□□□ -0.13
KCNQ3-208ENST00000639496 PLPPR3Q6T4P5 718 aa14.16□□□□□ -0.14
KCNQ3-208ENST00000639496 SCRIBQ14160 1630 aa14.16□□□□□ -0.14
KCNQ3-208ENST00000639496 CHMP7Q8WUX9 453 aaPredicted RBP14.12□□□□□ -0.15
KCNQ3-208ENST00000639496 TSPY4P0CV99 314 aa14.1□□□□□ -0.15
KCNQ3-208ENST00000639496 TSPY10P0CW01 314 aa14.1□□□□□ -0.15
KCNQ3-208ENST00000639496 BCL11AQ9H165 835 aa14.1□□□□□ -0.15
KCNQ3-208ENST00000639496 TONSLQ96HA7 1378 aa14.04□□□□□ -0.16
KCNQ3-208ENST00000639496 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.02□□□□□ -0.17
KCNQ3-208ENST00000639496 MTUS2Q5JR59 1369 aa13.95□□□□□ -0.18
KCNQ3-208ENST00000639496 CHIC2Q9UKJ5 165 aa13.94□□□□□ -0.18
KCNQ3-208ENST00000639496 NPM2Q86SE8 214 aaKnown RBP13.94□□□□□ -0.18
KCNQ3-208ENST00000639496 PLEKHD1A6NEE1 506 aa13.92□□□□□ -0.18
KCNQ3-208ENST00000639496 SCAF1Q9H7N4 1312 aaKnown RBP13.91□□□□□ -0.18
KCNQ3-208ENST00000639496 PPP1R15AO75807 674 aaPredicted RBP13.9□□□□□ -0.18
KCNQ3-208ENST00000639496 KCNH8Q96L42 1107 aa13.89□□□□□ -0.19
KCNQ3-208ENST00000639496 C14orf37Q86TY3 774 aa13.87□□□□□ -0.19
KCNQ3-208ENST00000639496 ACIN1Q9UKV3 1341 aaKnown RBP13.85□□□□□ -0.19
KCNQ3-208ENST00000639496 ZCCHC6Q5VYS8 1495 aaKnown RBP13.85□□□□□ -0.19
KCNQ3-208ENST00000639496 A0A0G2JS52 829 aa13.85□□□□□ -0.19
KCNQ3-208ENST00000639496 ARID4BQ4LE39 1312 aaPredicted RBP13.84□□□□□ -0.19
KCNQ3-208ENST00000639496 TMC1Q8TDI8 760 aa13.84□□□□□ -0.19
KCNQ3-208ENST00000639496 KDM2AQ9Y2K7 1162 aa13.84□□□□□ -0.19
KCNQ3-208ENST00000639496 UPF2Q9HAU5 1272 aaKnown RBP13.82□□□□□ -0.2
KCNQ3-208ENST00000639496 ANP32AP39687 249 aaKnown RBP13.82□□□□□ -0.2
KCNQ3-208ENST00000639496 WDR43Q15061 677 aaKnown RBP eCLIP13.82□□□□□ -0.2
KCNQ3-208ENST00000639496 RB1CC1Q8TDY2 1594 aa13.82□□□□□ -0.2
KCNQ3-208ENST00000639496 HSP90AA1P07900 732 aaKnown RBP13.82□□□□□ -0.2
KCNQ3-208ENST00000639496 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.81□□□□□ -0.2
KCNQ3-208ENST00000639496 RSF1Q96T23 1441 aaPredicted RBP13.79□□□□□ -0.2
KCNQ3-208ENST00000639496 HAP1P54257 671 aaPredicted RBP13.79□□□□□ -0.2
KCNQ3-208ENST00000639496 GTF3C3Q9Y5Q9 886 aa13.79□□□□□ -0.2
KCNQ3-208ENST00000639496 HNRNPUQ00839 825 aaKnown RBP eCLIP13.77□□□□□ -0.2
KCNQ3-208ENST00000639496 FAM9BQ8IZU0 186 aa13.77□□□□□ -0.21
KCNQ3-208ENST00000639496 DDX10Q13206 875 aaKnown RBP13.76□□□□□ -0.21
KCNQ3-208ENST00000639496 SALL2Q9Y467 1007 aaPredicted RBP13.74□□□□□ -0.21
KCNQ3-208ENST00000639496 ZBTB7CA1YPR0 619 aa13.73□□□□□ -0.21
KCNQ3-208ENST00000639496 CFDP1Q9UEE9 299 aaPredicted RBP13.73□□□□□ -0.21
KCNQ3-208ENST00000639496 CLIP1P30622 1438 aa13.73□□□□□ -0.21
KCNQ3-208ENST00000639496 ANP32BQ92688 251 aaKnown RBP13.73□□□□□ -0.21
KCNQ3-208ENST00000639496 ERCC6Q03468 1493 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms