RNA–Protein interactions for RNA: ENST00000636610.1

CACNA1A-228, Transcript of calcium voltage-gated channel subunit alpha1 A, humanhuman

TSL 5

Gene CACNA1A, Length 3,011 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1A-228ENST00000636610 NISCHQ9Y2I1 1504 aa28.18■■■□□ 2.1
CACNA1A-228ENST00000636610 SHROOM4Q9ULL8 1493 aa24.98■■□□□ 1.59
CACNA1A-228ENST00000636610 SUPT5HO00267 1087 aaKnown RBP24.59■■□□□ 1.53
CACNA1A-228ENST00000636610 DCAF8L2P0C7V8 631 aa24.35■■□□□ 1.49
CACNA1A-228ENST00000636610 ZCCHC6Q5VYS8 1495 aaKnown RBP23.79■■□□□ 1.4
CACNA1A-228ENST00000636610 CHIC1Q5VXU3 224 aa23.61■■□□□ 1.37
CACNA1A-228ENST00000636610 MYO15BQ96JP2 1530 aa23.53■■□□□ 1.36
CACNA1A-228ENST00000636610 CCDC180Q9P1Z9 1646 aa23.49■■□□□ 1.35
CACNA1A-228ENST00000636610 PCGF6Q9BYE7 350 aa23.35■■□□□ 1.33
CACNA1A-228ENST00000636610 LOC105371045A0A1W2PR82 267 aa23.25■■□□□ 1.31
CACNA1A-228ENST00000636610 HRCP23327 699 aa23.1■■□□□ 1.29
CACNA1A-228ENST00000636610 PPARGC1BQ86YN6 1023 aaKnown RBP23.05■■□□□ 1.28
CACNA1A-228ENST00000636610 EHMT2Q96KQ7 1210 aa22.97■■□□□ 1.27
CACNA1A-228ENST00000636610 FAM9AQ8IZU1 332 aaPredicted RBP22.85■■□□□ 1.25
CACNA1A-228ENST00000636610 DCAF1Q9Y4B6 1507 aa22.73■■□□□ 1.23
CACNA1A-228ENST00000636610 SCRIBQ14160 1630 aa22.67■■□□□ 1.22
CACNA1A-228ENST00000636610 TRIM41Q8WV44 630 aa22.64■■□□□ 1.21
CACNA1A-228ENST00000636610 RSF1Q96T23 1441 aaPredicted RBP22.53■■□□□ 1.2
CACNA1A-228ENST00000636610 TRIM26Q12899 539 aaPredicted RBP22.49■■□□□ 1.19
CACNA1A-228ENST00000636610 ABCC9O60706 1549 aa22.46■■□□□ 1.19
CACNA1A-228ENST00000636610 RB1CC1Q8TDY2 1594 aa22.34■■□□□ 1.17
CACNA1A-228ENST00000636610 CECR2Q9BXF3 1484 aa22.29■■□□□ 1.16
CACNA1A-228ENST00000636610 TTBK1Q5TCY1 1321 aaPredicted RBP22.19■■□□□ 1.14
CACNA1A-228ENST00000636610 MROH2BQ7Z745 1585 aa22.1■■□□□ 1.13
CACNA1A-228ENST00000636610 WIZO95785 1651 aa21.97■■□□□ 1.11
CACNA1A-228ENST00000636610 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.94■■□□□ 1.1
CACNA1A-228ENST00000636610 ZEB1P37275 1124 aaPredicted RBP21.88■■□□□ 1.09
CACNA1A-228ENST00000636610 NACADO15069 1562 aa21.86■■□□□ 1.09
CACNA1A-228ENST00000636610 PABPN1Q86U42 306 aaKnown RBP eCLIP21.79■■□□□ 1.08
CACNA1A-228ENST00000636610 CCER1Q8TC90 406 aaPredicted RBP21.79■■□□□ 1.08
CACNA1A-228ENST00000636610 ABCC8Q09428 1581 aa21.71■■□□□ 1.07
CACNA1A-228ENST00000636610 UBTFP17480 764 aaKnown RBP21.66■■□□□ 1.06
CACNA1A-228ENST00000636610 CCDC88BA6NC98 1476 aa21.64■■□□□ 1.06
CACNA1A-228ENST00000636610 RANGAP1P46060 587 aaPredicted RBP21.62■■□□□ 1.05
CACNA1A-228ENST00000636610 SOGA1O94964 1423 aa21.58■■□□□ 1.05
CACNA1A-228ENST00000636610 BAZ1AQ9NRL2 1556 aaPredicted RBP21.57■■□□□ 1.04
CACNA1A-228ENST00000636610 SCAF1Q9H7N4 1312 aaKnown RBP21.54■■□□□ 1.04
CACNA1A-228ENST00000636610 RUSC2Q8N2Y8 1516 aa21.5■■□□□ 1.03
CACNA1A-228ENST00000636610 CSRNP3Q8WYN3 585 aa21.45■■□□□ 1.02
CACNA1A-228ENST00000636610 CEP162Q5TB80 1403 aa21.44■■□□□ 1.02
CACNA1A-228ENST00000636610 TOP2AP11388 1531 aaKnown RBP21.4■■□□□ 1.02
CACNA1A-228ENST00000636610 SMARCA4P51532 1647 aa21.4■■□□□ 1.02
CACNA1A-228ENST00000636610 EIF4G1Q04637 1599 aaKnown RBP21.38■■□□□ 1.01
CACNA1A-228ENST00000636610 HNRNPUL2Q1KMD3 747 aaKnown RBP21.38■■□□□ 1.01
CACNA1A-228ENST00000636610 SMARCA2P51531 1590 aa21.37■■□□□ 1.01
CACNA1A-228ENST00000636610 DIEXFQ68CQ4 756 aaKnown RBP21.35■■□□□ 1.01
CACNA1A-228ENST00000636610 NEUROD1Q13562 356 aa21.29■■□□□ 1
CACNA1A-228ENST00000636610 TNIKQ9UKE5 1360 aa21.25■□□□□ 0.99
CACNA1A-228ENST00000636610 UNC13AQ9UPW8 1703 aa21.23■□□□□ 0.99
CACNA1A-228ENST00000636610 YTHDC1Q96MU7 727 aaKnown RBP21.23■□□□□ 0.99
CACNA1A-228ENST00000636610 WRNQ14191 1432 aaPredicted RBP eCLIP21.19■□□□□ 0.98
CACNA1A-228ENST00000636610 ACIN1Q9UKV3 1341 aaKnown RBP21.17■□□□□ 0.98
CACNA1A-228ENST00000636610 GTF3C3Q9Y5Q9 886 aa21.12■□□□□ 0.97
CACNA1A-228ENST00000636610 APLP2Q06481 763 aa21.11■□□□□ 0.97
CACNA1A-228ENST00000636610 GOLGA3Q08378 1498 aa21.1■□□□□ 0.97
CACNA1A-228ENST00000636610 BICRAQ9NZM4 1560 aa21.04■□□□□ 0.96
CACNA1A-228ENST00000636610 CLIP1P30622 1438 aa21.03■□□□□ 0.96
CACNA1A-228ENST00000636610 ZNF316A6NFI3 1004 aaPredicted RBP21.03■□□□□ 0.96
CACNA1A-228ENST00000636610 EEA1Q15075 1411 aa21.02■□□□□ 0.96
CACNA1A-228ENST00000636610 SYNJ1O43426 1573 aa21.01■□□□□ 0.95
CACNA1A-228ENST00000636610 CENPBP07199 599 aaPredicted RBP21■□□□□ 0.95
CACNA1A-228ENST00000636610 RAPGEF2Q9Y4G8 1499 aa20.96■□□□□ 0.95
CACNA1A-228ENST00000636610 BAZ1BQ9UIG0 1483 aaKnown RBP20.94■□□□□ 0.94
CACNA1A-228ENST00000636610 ATAD2BQ9ULI0 1458 aa20.93■□□□□ 0.94
CACNA1A-228ENST00000636610 MIER1Q8N108 512 aa20.93■□□□□ 0.94
CACNA1A-228ENST00000636610 CEP164Q9UPV0 1460 aa20.93■□□□□ 0.94
CACNA1A-228ENST00000636610 ITGAEP38570 1179 aa20.9■□□□□ 0.94
CACNA1A-228ENST00000636610 KANK4Q5T7N3 995 aaPredicted RBP20.82■□□□□ 0.92
CACNA1A-228ENST00000636610 VPS8Q8N3P4 1428 aa20.82■□□□□ 0.92
CACNA1A-228ENST00000636610 PELP1Q8IZL8 1130 aaKnown RBP20.8■□□□□ 0.92
CACNA1A-228ENST00000636610 PEG3Q9GZU2 1588 aa20.71■□□□□ 0.91
CACNA1A-228ENST00000636610 KIF21BO75037 1637 aa20.71■□□□□ 0.91
CACNA1A-228ENST00000636610 ATP1B4Q9UN42 357 aaPredicted RBP20.66■□□□□ 0.9
CACNA1A-228ENST00000636610 P3H3Q8IVL6 736 aa20.62■□□□□ 0.89
CACNA1A-228ENST00000636610 TOP2BQ02880 1626 aa20.56■□□□□ 0.88
CACNA1A-228ENST00000636610 ARAP1Q96P48 1450 aa20.56■□□□□ 0.88
CACNA1A-228ENST00000636610 DHX57Q6P158 1386 aaKnown RBP20.53■□□□□ 0.88
CACNA1A-228ENST00000636610 CUX1P39880 1505 aa20.5■□□□□ 0.87
CACNA1A-228ENST00000636610 PRXQ9BXM0 1461 aa20.49■□□□□ 0.87
CACNA1A-228ENST00000636610 KIF27Q86VH2 1401 aa20.48■□□□□ 0.87
CACNA1A-228ENST00000636610 FAM50AQ14320 339 aaKnown RBP20.46■□□□□ 0.87
CACNA1A-228ENST00000636610 KCNH8Q96L42 1107 aa20.4■□□□□ 0.86
CACNA1A-228ENST00000636610 HIRIP3Q9BW71 556 aaPredicted RBP20.4■□□□□ 0.86
CACNA1A-228ENST00000636610 CUX2O14529 1486 aa20.39■□□□□ 0.85
CACNA1A-228ENST00000636610 CCNB3Q8WWL7 1395 aa20.38■□□□□ 0.85
CACNA1A-228ENST00000636610 ARHGAP35Q9NRY4 1499 aa20.37■□□□□ 0.85
CACNA1A-228ENST00000636610 SIN3AQ96ST3 1273 aa20.36■□□□□ 0.85
CACNA1A-228ENST00000636610 BIVM-ERCC5R4GMW8 1640 aa20.36■□□□□ 0.85
CACNA1A-228ENST00000636610 NCAPD3P42695 1498 aa20.36■□□□□ 0.85
CACNA1A-228ENST00000636610 ERICH3Q5RHP9 1530 aa20.34■□□□□ 0.85
CACNA1A-228ENST00000636610 IGF1RP08069 1367 aa20.32■□□□□ 0.84
CACNA1A-228ENST00000636610 CFTRP13569 1480 aa20.3■□□□□ 0.84
CACNA1A-228ENST00000636610 RAB3GAP2Q9H2M9 1393 aa20.3■□□□□ 0.84
CACNA1A-228ENST00000636610 CARMIL1Q5VZK9 1371 aa20.28■□□□□ 0.84
CACNA1A-228ENST00000636610 RRBP1Q9P2E9 1410 aaKnown RBP20.26■□□□□ 0.83
CACNA1A-228ENST00000636610 DDX10Q13206 875 aaKnown RBP20.26■□□□□ 0.83
CACNA1A-228ENST00000636610 CLSPNQ9HAW4 1339 aa20.25■□□□□ 0.83
CACNA1A-228ENST00000636610 HMGXB3Q12766 1538 aa20.22■□□□□ 0.83
CACNA1A-228ENST00000636610 BCANQ96GW7 911 aa20.21■□□□□ 0.83
CACNA1A-228ENST00000636610 PHLDB1Q86UU1 1377 aa20.21■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms