RNA–Protein interactions for RNA: ENST00000635988.1

CACNA1A-220, Transcript of calcium voltage-gated channel subunit alpha1 A, humanhuman

TSL 5

Gene CACNA1A, Length 2,548 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1A-220ENST00000635988 NISCHQ9Y2I1 1504 aa29.26■■■□□ 2.27
CACNA1A-220ENST00000635988 SHROOM4Q9ULL8 1493 aa25.16■■□□□ 1.62
CACNA1A-220ENST00000635988 SUPT5HO00267 1087 aaKnown RBP24.96■■□□□ 1.59
CACNA1A-220ENST00000635988 ZCCHC6Q5VYS8 1495 aaKnown RBP24.85■■□□□ 1.57
CACNA1A-220ENST00000635988 HRCP23327 699 aa24.74■■□□□ 1.55
CACNA1A-220ENST00000635988 CCDC180Q9P1Z9 1646 aa24.68■■□□□ 1.54
CACNA1A-220ENST00000635988 CHIC1Q5VXU3 224 aa24.58■■□□□ 1.52
CACNA1A-220ENST00000635988 MYO15BQ96JP2 1530 aa24.53■■□□□ 1.52
CACNA1A-220ENST00000635988 PCGF6Q9BYE7 350 aa24.29■■□□□ 1.48
CACNA1A-220ENST00000635988 DCAF1Q9Y4B6 1507 aa24.2■■□□□ 1.47
CACNA1A-220ENST00000635988 DCAF8L2P0C7V8 631 aa24■■□□□ 1.43
CACNA1A-220ENST00000635988 PPARGC1BQ86YN6 1023 aaKnown RBP23.96■■□□□ 1.43
CACNA1A-220ENST00000635988 TRIM26Q12899 539 aaPredicted RBP23.83■■□□□ 1.41
CACNA1A-220ENST00000635988 LOC105371045A0A1W2PR82 267 aa23.78■■□□□ 1.4
CACNA1A-220ENST00000635988 ZEB1P37275 1124 aaPredicted RBP23.64■■□□□ 1.38
CACNA1A-220ENST00000635988 ABCC9O60706 1549 aa23.54■■□□□ 1.36
CACNA1A-220ENST00000635988 PELP1Q8IZL8 1130 aaKnown RBP23.45■■□□□ 1.34
CACNA1A-220ENST00000635988 RSF1Q96T23 1441 aaPredicted RBP23.33■■□□□ 1.32
CACNA1A-220ENST00000635988 TRIM41Q8WV44 630 aa23.29■■□□□ 1.32
CACNA1A-220ENST00000635988 RB1CC1Q8TDY2 1594 aa23.2■■□□□ 1.3
CACNA1A-220ENST00000635988 SCRIBQ14160 1630 aa23.1■■□□□ 1.29
CACNA1A-220ENST00000635988 SCAF1Q9H7N4 1312 aaKnown RBP23.03■■□□□ 1.28
CACNA1A-220ENST00000635988 FAM9AQ8IZU1 332 aaPredicted RBP23.01■■□□□ 1.27
CACNA1A-220ENST00000635988 ACIN1Q9UKV3 1341 aaKnown RBP22.73■■□□□ 1.23
CACNA1A-220ENST00000635988 MROH2BQ7Z745 1585 aa22.72■■□□□ 1.23
CACNA1A-220ENST00000635988 EHMT2Q96KQ7 1210 aa22.71■■□□□ 1.23
CACNA1A-220ENST00000635988 NACADO15069 1562 aa22.71■■□□□ 1.23
CACNA1A-220ENST00000635988 CCER1Q8TC90 406 aaPredicted RBP22.71■■□□□ 1.23
CACNA1A-220ENST00000635988 CECR2Q9BXF3 1484 aa22.71■■□□□ 1.23
CACNA1A-220ENST00000635988 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.64■■□□□ 1.22
CACNA1A-220ENST00000635988 CENPBP07199 599 aaPredicted RBP22.61■■□□□ 1.21
CACNA1A-220ENST00000635988 WIZO95785 1651 aa22.6■■□□□ 1.21
CACNA1A-220ENST00000635988 BAZ1AQ9NRL2 1556 aaPredicted RBP22.59■■□□□ 1.21
CACNA1A-220ENST00000635988 WRNQ14191 1432 aaPredicted RBP eCLIP22.57■■□□□ 1.2
CACNA1A-220ENST00000635988 NEUROD1Q13562 356 aa22.57■■□□□ 1.2
CACNA1A-220ENST00000635988 EIF4G1Q04637 1599 aaKnown RBP22.56■■□□□ 1.2
CACNA1A-220ENST00000635988 MYT1Q01538 1121 aa22.56■■□□□ 1.2
CACNA1A-220ENST00000635988 DIEXFQ68CQ4 756 aaKnown RBP22.55■■□□□ 1.2
CACNA1A-220ENST00000635988 GTF3C3Q9Y5Q9 886 aa22.43■■□□□ 1.18
CACNA1A-220ENST00000635988 CEP162Q5TB80 1403 aa22.37■■□□□ 1.17
CACNA1A-220ENST00000635988 TNIKQ9UKE5 1360 aa22.36■■□□□ 1.17
CACNA1A-220ENST00000635988 TOP2AP11388 1531 aaKnown RBP22.34■■□□□ 1.17
CACNA1A-220ENST00000635988 EEA1Q15075 1411 aa22.33■■□□□ 1.17
CACNA1A-220ENST00000635988 CCDC88BA6NC98 1476 aa22.3■■□□□ 1.16
CACNA1A-220ENST00000635988 ZNF316A6NFI3 1004 aaPredicted RBP22.28■■□□□ 1.16
CACNA1A-220ENST00000635988 ABCC8Q09428 1581 aa22.26■■□□□ 1.15
CACNA1A-220ENST00000635988 SMARCA2P51531 1590 aa22.2■■□□□ 1.14
CACNA1A-220ENST00000635988 CSRNP3Q8WYN3 585 aa22.18■■□□□ 1.14
CACNA1A-220ENST00000635988 SOGA1O94964 1423 aa22.18■■□□□ 1.14
CACNA1A-220ENST00000635988 SMARCA4P51532 1647 aa22.16■■□□□ 1.14
CACNA1A-220ENST00000635988 TTBK1Q5TCY1 1321 aaPredicted RBP22.15■■□□□ 1.14
CACNA1A-220ENST00000635988 GOLGA3Q08378 1498 aa22.13■■□□□ 1.13
CACNA1A-220ENST00000635988 UBTFP17480 764 aaKnown RBP22.11■■□□□ 1.13
CACNA1A-220ENST00000635988 RUSC2Q8N2Y8 1516 aa22■■□□□ 1.11
CACNA1A-220ENST00000635988 CEP164Q9UPV0 1460 aa21.96■■□□□ 1.11
CACNA1A-220ENST00000635988 YTHDC1Q96MU7 727 aaKnown RBP21.95■■□□□ 1.1
CACNA1A-220ENST00000635988 MIER1Q8N108 512 aa21.94■■□□□ 1.1
CACNA1A-220ENST00000635988 KIF21BO75037 1637 aa21.93■■□□□ 1.1
CACNA1A-220ENST00000635988 CLIP1P30622 1438 aa21.87■■□□□ 1.09
CACNA1A-220ENST00000635988 HNRNPUL2Q1KMD3 747 aaKnown RBP21.86■■□□□ 1.09
CACNA1A-220ENST00000635988 VPS8Q8N3P4 1428 aa21.86■■□□□ 1.09
CACNA1A-220ENST00000635988 BAZ1BQ9UIG0 1483 aaKnown RBP21.84■■□□□ 1.09
CACNA1A-220ENST00000635988 CLSPNQ9HAW4 1339 aa21.83■■□□□ 1.08
CACNA1A-220ENST00000635988 APLP2Q06481 763 aa21.81■■□□□ 1.08
CACNA1A-220ENST00000635988 UNC13AQ9UPW8 1703 aa21.79■■□□□ 1.08
CACNA1A-220ENST00000635988 PEG3Q9GZU2 1588 aa21.76■■□□□ 1.07
CACNA1A-220ENST00000635988 SYNJ1O43426 1573 aa21.73■■□□□ 1.07
CACNA1A-220ENST00000635988 RAPGEF2Q9Y4G8 1499 aa21.63■■□□□ 1.05
CACNA1A-220ENST00000635988 DHX57Q6P158 1386 aaKnown RBP21.59■■□□□ 1.05
CACNA1A-220ENST00000635988 BICRAQ9NZM4 1560 aa21.52■■□□□ 1.04
CACNA1A-220ENST00000635988 ERICH3Q5RHP9 1530 aa21.51■■□□□ 1.03
CACNA1A-220ENST00000635988 SUPT16HQ9Y5B9 1047 aaKnown RBP21.51■■□□□ 1.03
CACNA1A-220ENST00000635988 TOP2BQ02880 1626 aa21.49■■□□□ 1.03
CACNA1A-220ENST00000635988 ATAD2BQ9ULI0 1458 aa21.47■■□□□ 1.03
CACNA1A-220ENST00000635988 RRBP1Q9P2E9 1410 aaKnown RBP21.44■■□□□ 1.02
CACNA1A-220ENST00000635988 CUX2O14529 1486 aa21.43■■□□□ 1.02
CACNA1A-220ENST00000635988 PRXQ9BXM0 1461 aa21.43■■□□□ 1.02
CACNA1A-220ENST00000635988 ARAP1Q96P48 1450 aa21.42■■□□□ 1.02
CACNA1A-220ENST00000635988 PABPN1Q86U42 306 aaKnown RBP eCLIP21.41■■□□□ 1.02
CACNA1A-220ENST00000635988 BIVM-ERCC5R4GMW8 1640 aa21.4■■□□□ 1.02
CACNA1A-220ENST00000635988 RANGAP1P46060 587 aaPredicted RBP21.39■■□□□ 1.02
CACNA1A-220ENST00000635988 KANK4Q5T7N3 995 aaPredicted RBP21.33■■□□□ 1.01
CACNA1A-220ENST00000635988 CCNB3Q8WWL7 1395 aa21.3■■□□□ 1
CACNA1A-220ENST00000635988 TSHZ2Q9NRE2 1034 aa21.28■■□□□ 1
CACNA1A-220ENST00000635988 KIF27Q86VH2 1401 aa21.23■□□□□ 0.99
CACNA1A-220ENST00000635988 ANP32EQ9BTT0 268 aa21.19■□□□□ 0.98
CACNA1A-220ENST00000635988 ARHGAP35Q9NRY4 1499 aa21.16■□□□□ 0.98
CACNA1A-220ENST00000635988 MAP3K1Q13233 1512 aa21.15■□□□□ 0.98
CACNA1A-220ENST00000635988 RAB3GAP2Q9H2M9 1393 aa21.15■□□□□ 0.98
CACNA1A-220ENST00000635988 MAPKBP1O60336 1514 aa21.13■□□□□ 0.97
CACNA1A-220ENST00000635988 CUX1P39880 1505 aa21.12■□□□□ 0.97
CACNA1A-220ENST00000635988 TIMELESSQ9UNS1 1208 aa21.09■□□□□ 0.97
CACNA1A-220ENST00000635988 SETD5Q9C0A6 1442 aa21.09■□□□□ 0.97
CACNA1A-220ENST00000635988 ITGAEP38570 1179 aa21.06■□□□□ 0.96
CACNA1A-220ENST00000635988 TIAM1Q13009 1591 aa21.05■□□□□ 0.96
CACNA1A-220ENST00000635988 HMGXB3Q12766 1538 aa21.05■□□□□ 0.96
CACNA1A-220ENST00000635988 KCNH8Q96L42 1107 aa21.04■□□□□ 0.96
CACNA1A-220ENST00000635988 NCAPD3P42695 1498 aa21.01■□□□□ 0.95
CACNA1A-220ENST00000635988 FKBP8Q14318 412 aa21■□□□□ 0.95
CACNA1A-220ENST00000635988 NEFLP07196 543 aa21■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms