RNA–Protein interactions for RNA: ENST00000635945.1

SCN2A-208, Transcript of sodium voltage-gated channel alpha subunit 2, humanhuman

TSL 5

Gene SCN2A, Length 3,119 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN2A-208ENST00000635945 NISCHQ9Y2I1 1504 aa14.09□□□□□ -0.15
SCN2A-208ENST00000635945 PPARGC1BQ86YN6 1023 aaKnown RBP12.85□□□□□ -0.35
SCN2A-208ENST00000635945 HRCP23327 699 aa12.81□□□□□ -0.36
SCN2A-208ENST00000635945 CCDC180Q9P1Z9 1646 aa12.79□□□□□ -0.36
SCN2A-208ENST00000635945 SHROOM4Q9ULL8 1493 aa12.75□□□□□ -0.37
SCN2A-208ENST00000635945 SUPT5HO00267 1087 aaKnown RBP12.73□□□□□ -0.37
SCN2A-208ENST00000635945 PCGF6Q9BYE7 350 aa12.73□□□□□ -0.37
SCN2A-208ENST00000635945 MYO15BQ96JP2 1530 aa12.45□□□□□ -0.42
SCN2A-208ENST00000635945 CHIC1Q5VXU3 224 aa12.33□□□□□ -0.44
SCN2A-208ENST00000635945 SCAF1Q9H7N4 1312 aaKnown RBP12.29□□□□□ -0.44
SCN2A-208ENST00000635945 PELP1Q8IZL8 1130 aaKnown RBP12.28□□□□□ -0.44
SCN2A-208ENST00000635945 LOC105371045A0A1W2PR82 267 aa12.27□□□□□ -0.44
SCN2A-208ENST00000635945 TRIM26Q12899 539 aaPredicted RBP12.05□□□□□ -0.48
SCN2A-208ENST00000635945 EHMT2Q96KQ7 1210 aa12.04□□□□□ -0.48
SCN2A-208ENST00000635945 DCAF8L2P0C7V8 631 aa12.03□□□□□ -0.48
SCN2A-208ENST00000635945 NEUROD1Q13562 356 aa11.94□□□□□ -0.5
SCN2A-208ENST00000635945 DCAF1Q9Y4B6 1507 aa11.93□□□□□ -0.5
SCN2A-208ENST00000635945 GTF3C3Q9Y5Q9 886 aa11.91□□□□□ -0.5
SCN2A-208ENST00000635945 FAM9AQ8IZU1 332 aaPredicted RBP11.87□□□□□ -0.51
SCN2A-208ENST00000635945 ACIN1Q9UKV3 1341 aaKnown RBP11.86□□□□□ -0.51
SCN2A-208ENST00000635945 ZEB1P37275 1124 aaPredicted RBP11.85□□□□□ -0.51
SCN2A-208ENST00000635945 NACADO15069 1562 aa11.82□□□□□ -0.52
SCN2A-208ENST00000635945 ZCCHC6Q5VYS8 1495 aaKnown RBP11.82□□□□□ -0.52
SCN2A-208ENST00000635945 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.78□□□□□ -0.52
SCN2A-208ENST00000635945 ABCC9O60706 1549 aa11.78□□□□□ -0.52
SCN2A-208ENST00000635945 YTHDC1Q96MU7 727 aaKnown RBP11.75□□□□□ -0.53
SCN2A-208ENST00000635945 RB1CC1Q8TDY2 1594 aa11.74□□□□□ -0.53
SCN2A-208ENST00000635945 MYT1Q01538 1121 aa11.72□□□□□ -0.53
SCN2A-208ENST00000635945 TTBK1Q5TCY1 1321 aaPredicted RBP11.72□□□□□ -0.53
SCN2A-208ENST00000635945 CCER1Q8TC90 406 aaPredicted RBP11.69□□□□□ -0.54
SCN2A-208ENST00000635945 DIEXFQ68CQ4 756 aaKnown RBP11.68□□□□□ -0.54
SCN2A-208ENST00000635945 UNC13AQ9UPW8 1703 aa11.67□□□□□ -0.54
SCN2A-208ENST00000635945 CENPBP07199 599 aaPredicted RBP11.67□□□□□ -0.54
SCN2A-208ENST00000635945 TRIM41Q8WV44 630 aa11.6□□□□□ -0.55
SCN2A-208ENST00000635945 BICRAQ9NZM4 1560 aa11.45□□□□□ -0.58
SCN2A-208ENST00000635945 MIER1Q8N108 512 aa11.42□□□□□ -0.58
SCN2A-208ENST00000635945 ZNF316A6NFI3 1004 aaPredicted RBP11.35□□□□□ -0.59
SCN2A-208ENST00000635945 BCL11AQ9H165 835 aa11.33□□□□□ -0.6
SCN2A-208ENST00000635945 HNRNPUL2Q1KMD3 747 aaKnown RBP11.24□□□□□ -0.61
SCN2A-208ENST00000635945 SCRIBQ14160 1630 aa11.23□□□□□ -0.61
SCN2A-208ENST00000635945 CSRNP3Q8WYN3 585 aa11.23□□□□□ -0.61
SCN2A-208ENST00000635945 BCANQ96GW7 911 aa11.23□□□□□ -0.61
SCN2A-208ENST00000635945 SUPT16HQ9Y5B9 1047 aaKnown RBP11.22□□□□□ -0.61
SCN2A-208ENST00000635945 ANP32EQ9BTT0 268 aa11.21□□□□□ -0.62
SCN2A-208ENST00000635945 TSHZ2Q9NRE2 1034 aa11.2□□□□□ -0.62
SCN2A-208ENST00000635945 RSF1Q96T23 1441 aaPredicted RBP11.17□□□□□ -0.62
SCN2A-208ENST00000635945 RANGAP1P46060 587 aaPredicted RBP11.09□□□□□ -0.63
SCN2A-208ENST00000635945 UBTFP17480 764 aaKnown RBP11.07□□□□□ -0.64
SCN2A-208ENST00000635945 KCNH8Q96L42 1107 aa11.07□□□□□ -0.64
SCN2A-208ENST00000635945 PEG3Q9GZU2 1588 aa11.05□□□□□ -0.64
SCN2A-208ENST00000635945 ITGAEP38570 1179 aa11.03□□□□□ -0.64
SCN2A-208ENST00000635945 EIF4G1Q04637 1599 aaKnown RBP11.02□□□□□ -0.64
SCN2A-208ENST00000635945 FKBP8Q14318 412 aa11□□□□□ -0.65
SCN2A-208ENST00000635945 CEP162Q5TB80 1403 aa10.99□□□□□ -0.65
SCN2A-208ENST00000635945 SMARCA4P51532 1647 aa10.96□□□□□ -0.65
SCN2A-208ENST00000635945 RBM19Q9Y4C8 960 aaKnown RBP10.94□□□□□ -0.66
SCN2A-208ENST00000635945 CC2D2AQ9P2K1 1620 aa10.93□□□□□ -0.66
SCN2A-208ENST00000635945 BAZ1AQ9NRL2 1556 aaPredicted RBP10.92□□□□□ -0.66
SCN2A-208ENST00000635945 CECR2Q9BXF3 1484 aa10.92□□□□□ -0.66
SCN2A-208ENST00000635945 SOGA1O94964 1423 aa10.9□□□□□ -0.66
SCN2A-208ENST00000635945 HMGXB3Q12766 1538 aa10.9□□□□□ -0.66
SCN2A-208ENST00000635945 PRKCSHP14314 528 aaPredicted RBP10.9□□□□□ -0.66
SCN2A-208ENST00000635945 SMARCA2P51531 1590 aa10.9□□□□□ -0.67
SCN2A-208ENST00000635945 ABCC8Q09428 1581 aa10.89□□□□□ -0.67
SCN2A-208ENST00000635945 CCDC88BA6NC98 1476 aa10.89□□□□□ -0.67
SCN2A-208ENST00000635945 MSH5O43196 834 aa10.88□□□□□ -0.67
SCN2A-208ENST00000635945 TRIM52Q96A61 297 aa10.87□□□□□ -0.67
SCN2A-208ENST00000635945 WRNQ14191 1432 aaPredicted RBP eCLIP10.87□□□□□ -0.67
SCN2A-208ENST00000635945 RUSC2Q8N2Y8 1516 aa10.86□□□□□ -0.67
SCN2A-208ENST00000635945 IRX6P78412 446 aaPredicted RBP10.84□□□□□ -0.67
SCN2A-208ENST00000635945 HIRIP3Q9BW71 556 aaPredicted RBP10.84□□□□□ -0.67
SCN2A-208ENST00000635945 APLP2Q06481 763 aa10.84□□□□□ -0.67
SCN2A-208ENST00000635945 MROH2BQ7Z745 1585 aa10.83□□□□□ -0.68
SCN2A-208ENST00000635945 CLSPNQ9HAW4 1339 aa10.83□□□□□ -0.68
SCN2A-208ENST00000635945 NCAPD3P42695 1498 aa10.83□□□□□ -0.68
SCN2A-208ENST00000635945 WIZO95785 1651 aa10.82□□□□□ -0.68
SCN2A-208ENST00000635945 DDX10Q13206 875 aaKnown RBP10.81□□□□□ -0.68
SCN2A-208ENST00000635945 ERICH6Q7L0X2 663 aa10.81□□□□□ -0.68
SCN2A-208ENST00000635945 NEFLP07196 543 aa10.8□□□□□ -0.68
SCN2A-208ENST00000635945 PABPN1Q86U42 306 aaKnown RBP eCLIP10.8□□□□□ -0.68
SCN2A-208ENST00000635945 TNIKQ9UKE5 1360 aa10.8□□□□□ -0.68
SCN2A-208ENST00000635945 ATAD2BQ9ULI0 1458 aa10.76□□□□□ -0.69
SCN2A-208ENST00000635945 ANO8Q9HCE9 1232 aaPredicted RBP10.74□□□□□ -0.69
SCN2A-208ENST00000635945 DHX57Q6P158 1386 aaKnown RBP10.74□□□□□ -0.69
SCN2A-208ENST00000635945 PRDM2Q13029 1718 aa10.74□□□□□ -0.69
SCN2A-208ENST00000635945 NBR1Q14596 966 aa10.72□□□□□ -0.69
SCN2A-208ENST00000635945 DEKP35659 375 aaKnown RBP10.7□□□□□ -0.7
SCN2A-208ENST00000635945 CLIP1P30622 1438 aa10.68□□□□□ -0.7
SCN2A-208ENST00000635945 TOP2AP11388 1531 aaKnown RBP10.68□□□□□ -0.7
SCN2A-208ENST00000635945 KANK4Q5T7N3 995 aaPredicted RBP10.67□□□□□ -0.7
SCN2A-208ENST00000635945 CCDC136Q96JN2 1154 aa10.67□□□□□ -0.7
SCN2A-208ENST00000635945 DNAJC5BQ9UF47 199 aa10.67□□□□□ -0.7
SCN2A-208ENST00000635945 SIN3AQ96ST3 1273 aa10.66□□□□□ -0.7
SCN2A-208ENST00000635945 GOLGA3Q08378 1498 aa10.65□□□□□ -0.7
SCN2A-208ENST00000635945 RTN4Q9NQC3 1192 aaKnown RBP10.65□□□□□ -0.7
SCN2A-208ENST00000635945 CDK11AQ9UQ88 783 aaPredicted RBP10.64□□□□□ -0.71
SCN2A-208ENST00000635945 SALL2Q9Y467 1007 aaPredicted RBP10.62□□□□□ -0.71
SCN2A-208ENST00000635945 BAZ1BQ9UIG0 1483 aaKnown RBP10.6□□□□□ -0.71
SCN2A-208ENST00000635945 HNRNPUQ00839 825 aaKnown RBP eCLIP10.6□□□□□ -0.71
SCN2A-208ENST00000635945 VPS8Q8N3P4 1428 aa10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms