RNA–Protein interactions for RNA: ENST00000629277.1

MECP2-218, Transcript of methyl-CpG binding protein 2, humanhuman

Gene MECP2, Length 2,558 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MECP2-218ENST00000629277 NISCHQ9Y2I1 1504 aa37.42■■■■□ 3.58
MECP2-218ENST00000629277 SHROOM4Q9ULL8 1493 aa32.71■■■□□ 2.83
MECP2-218ENST00000629277 SUPT5HO00267 1087 aaKnown RBP32.28■■■□□ 2.76
MECP2-218ENST00000629277 ZCCHC6Q5VYS8 1495 aaKnown RBP31.72■■■□□ 2.67
MECP2-218ENST00000629277 MYO15BQ96JP2 1530 aa31.53■■■□□ 2.64
MECP2-218ENST00000629277 CHIC1Q5VXU3 224 aa31.46■■■□□ 2.63
MECP2-218ENST00000629277 DCAF8L2P0C7V8 631 aa31.37■■■□□ 2.61
MECP2-218ENST00000629277 CCDC180Q9P1Z9 1646 aa31.32■■■□□ 2.61
MECP2-218ENST00000629277 HRCP23327 699 aa31.28■■■□□ 2.6
MECP2-218ENST00000629277 PCGF6Q9BYE7 350 aa31.11■■■□□ 2.57
MECP2-218ENST00000629277 PPARGC1BQ86YN6 1023 aaKnown RBP30.83■■■□□ 2.53
MECP2-218ENST00000629277 LOC105371045A0A1W2PR82 267 aa30.74■■■□□ 2.51
MECP2-218ENST00000629277 DCAF1Q9Y4B6 1507 aa30.49■■■□□ 2.47
MECP2-218ENST00000629277 TRIM26Q12899 539 aaPredicted RBP30.19■■■□□ 2.42
MECP2-218ENST00000629277 ABCC9O60706 1549 aa30.01■■■□□ 2.39
MECP2-218ENST00000629277 RSF1Q96T23 1441 aaPredicted RBP29.91■■■□□ 2.38
MECP2-218ENST00000629277 FAM9AQ8IZU1 332 aaPredicted RBP29.88■■■□□ 2.37
MECP2-218ENST00000629277 TRIM41Q8WV44 630 aa29.87■■■□□ 2.37
MECP2-218ENST00000629277 SCRIBQ14160 1630 aa29.83■■■□□ 2.37
MECP2-218ENST00000629277 EHMT2Q96KQ7 1210 aa29.8■■■□□ 2.36
MECP2-218ENST00000629277 RB1CC1Q8TDY2 1594 aa29.69■■■□□ 2.34
MECP2-218ENST00000629277 ZEB1P37275 1124 aaPredicted RBP29.59■■■□□ 2.33
MECP2-218ENST00000629277 CECR2Q9BXF3 1484 aa29.37■■■□□ 2.29
MECP2-218ENST00000629277 SCAF1Q9H7N4 1312 aaKnown RBP29.25■■■□□ 2.27
MECP2-218ENST00000629277 MROH2BQ7Z745 1585 aa29.24■■■□□ 2.27
MECP2-218ENST00000629277 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP29.11■■■□□ 2.25
MECP2-218ENST00000629277 WIZO95785 1651 aa29.1■■■□□ 2.25
MECP2-218ENST00000629277 CCER1Q8TC90 406 aaPredicted RBP28.96■■■□□ 2.23
MECP2-218ENST00000629277 NACADO15069 1562 aa28.95■■■□□ 2.23
MECP2-218ENST00000629277 TTBK1Q5TCY1 1321 aaPredicted RBP28.92■■■□□ 2.22
MECP2-218ENST00000629277 PELP1Q8IZL8 1130 aaKnown RBP28.82■■■□□ 2.2
MECP2-218ENST00000629277 BAZ1AQ9NRL2 1556 aaPredicted RBP28.79■■■□□ 2.2
MECP2-218ENST00000629277 EIF4G1Q04637 1599 aaKnown RBP28.77■■■□□ 2.2
MECP2-218ENST00000629277 NEUROD1Q13562 356 aa28.72■■■□□ 2.19
MECP2-218ENST00000629277 ABCC8Q09428 1581 aa28.72■■■□□ 2.19
MECP2-218ENST00000629277 CCDC88BA6NC98 1476 aa28.7■■■□□ 2.18
MECP2-218ENST00000629277 ACIN1Q9UKV3 1341 aaKnown RBP28.69■■■□□ 2.18
MECP2-218ENST00000629277 DIEXFQ68CQ4 756 aaKnown RBP28.63■■■□□ 2.17
MECP2-218ENST00000629277 SOGA1O94964 1423 aa28.58■■■□□ 2.17
MECP2-218ENST00000629277 CEP162Q5TB80 1403 aa28.58■■■□□ 2.17
MECP2-218ENST00000629277 WRNQ14191 1432 aaPredicted RBP eCLIP28.52■■■□□ 2.16
MECP2-218ENST00000629277 TOP2AP11388 1531 aaKnown RBP28.49■■■□□ 2.15
MECP2-218ENST00000629277 GTF3C3Q9Y5Q9 886 aa28.47■■■□□ 2.15
MECP2-218ENST00000629277 RUSC2Q8N2Y8 1516 aa28.44■■■□□ 2.14
MECP2-218ENST00000629277 UBTFP17480 764 aaKnown RBP28.43■■■□□ 2.14
MECP2-218ENST00000629277 SMARCA2P51531 1590 aa28.42■■■□□ 2.14
MECP2-218ENST00000629277 TNIKQ9UKE5 1360 aa28.4■■■□□ 2.14
MECP2-218ENST00000629277 CSRNP3Q8WYN3 585 aa28.38■■■□□ 2.13
MECP2-218ENST00000629277 SMARCA4P51532 1647 aa28.38■■■□□ 2.13
MECP2-218ENST00000629277 CENPBP07199 599 aaPredicted RBP28.35■■■□□ 2.13
MECP2-218ENST00000629277 ZNF316A6NFI3 1004 aaPredicted RBP28.23■■■□□ 2.11
MECP2-218ENST00000629277 YTHDC1Q96MU7 727 aaKnown RBP28.18■■■□□ 2.1
MECP2-218ENST00000629277 HNRNPUL2Q1KMD3 747 aaKnown RBP28.17■■■□□ 2.1
MECP2-218ENST00000629277 EEA1Q15075 1411 aa28.17■■■□□ 2.1
MECP2-218ENST00000629277 GOLGA3Q08378 1498 aa28.14■■■□□ 2.1
MECP2-218ENST00000629277 PABPN1Q86U42 306 aaKnown RBP eCLIP28.1■■■□□ 2.09
MECP2-218ENST00000629277 UNC13AQ9UPW8 1703 aa28.06■■■□□ 2.08
MECP2-218ENST00000629277 MIER1Q8N108 512 aa28.03■■■□□ 2.08
MECP2-218ENST00000629277 RANGAP1P46060 587 aaPredicted RBP28■■■□□ 2.07
MECP2-218ENST00000629277 CLIP1P30622 1438 aa27.93■■■□□ 2.06
MECP2-218ENST00000629277 SYNJ1O43426 1573 aa27.92■■■□□ 2.06
MECP2-218ENST00000629277 CEP164Q9UPV0 1460 aa27.91■■■□□ 2.06
MECP2-218ENST00000629277 MYT1Q01538 1121 aa27.86■■■□□ 2.05
MECP2-218ENST00000629277 VPS8Q8N3P4 1428 aa27.81■■■□□ 2.04
MECP2-218ENST00000629277 RAPGEF2Q9Y4G8 1499 aa27.8■■■□□ 2.04
MECP2-218ENST00000629277 KIF21BO75037 1637 aa27.79■■■□□ 2.04
MECP2-218ENST00000629277 APLP2Q06481 763 aa27.79■■■□□ 2.04
MECP2-218ENST00000629277 BICRAQ9NZM4 1560 aa27.76■■■□□ 2.03
MECP2-218ENST00000629277 PEG3Q9GZU2 1588 aa27.68■■■□□ 2.02
MECP2-218ENST00000629277 BAZ1BQ9UIG0 1483 aaKnown RBP27.62■■■□□ 2.01
MECP2-218ENST00000629277 ATAD2BQ9ULI0 1458 aa27.61■■■□□ 2.01
MECP2-218ENST00000629277 KANK4Q5T7N3 995 aaPredicted RBP27.53■■■□□ 2
MECP2-218ENST00000629277 DHX57Q6P158 1386 aaKnown RBP27.51■■□□□ 1.99
MECP2-218ENST00000629277 ARAP1Q96P48 1450 aa27.41■■□□□ 1.98
MECP2-218ENST00000629277 TOP2BQ02880 1626 aa27.4■■□□□ 1.98
MECP2-218ENST00000629277 CLSPNQ9HAW4 1339 aa27.34■■□□□ 1.97
MECP2-218ENST00000629277 PRXQ9BXM0 1461 aa27.34■■□□□ 1.97
MECP2-218ENST00000629277 ITGAEP38570 1179 aa27.3■■□□□ 1.96
MECP2-218ENST00000629277 SUPT16HQ9Y5B9 1047 aaKnown RBP27.26■■□□□ 1.95
MECP2-218ENST00000629277 ERICH3Q5RHP9 1530 aa27.26■■□□□ 1.95
MECP2-218ENST00000629277 BIVM-ERCC5R4GMW8 1640 aa27.23■■□□□ 1.95
MECP2-218ENST00000629277 RRBP1Q9P2E9 1410 aaKnown RBP27.21■■□□□ 1.95
MECP2-218ENST00000629277 KCNH8Q96L42 1107 aa27.16■■□□□ 1.94
MECP2-218ENST00000629277 CUX1P39880 1505 aa27.16■■□□□ 1.94
MECP2-218ENST00000629277 CCNB3Q8WWL7 1395 aa27.15■■□□□ 1.94
MECP2-218ENST00000629277 KIF27Q86VH2 1401 aa27.1■■□□□ 1.93
MECP2-218ENST00000629277 ARHGAP35Q9NRY4 1499 aa27.1■■□□□ 1.93
MECP2-218ENST00000629277 CUX2O14529 1486 aa27.06■■□□□ 1.92
MECP2-218ENST00000629277 RAB3GAP2Q9H2M9 1393 aa27.03■■□□□ 1.92
MECP2-218ENST00000629277 MAPKBP1O60336 1514 aa26.95■■□□□ 1.91
MECP2-218ENST00000629277 TSHZ2Q9NRE2 1034 aa26.94■■□□□ 1.9
MECP2-218ENST00000629277 SIN3AQ96ST3 1273 aa26.92■■□□□ 1.9
MECP2-218ENST00000629277 NCAPD3P42695 1498 aa26.9■■□□□ 1.9
MECP2-218ENST00000629277 DDX10Q13206 875 aaKnown RBP26.88■■□□□ 1.89
MECP2-218ENST00000629277 BCANQ96GW7 911 aa26.88■■□□□ 1.89
MECP2-218ENST00000629277 CFTRP13569 1480 aa26.87■■□□□ 1.89
MECP2-218ENST00000629277 IGF1RP08069 1367 aa26.86■■□□□ 1.89
MECP2-218ENST00000629277 FAM50AQ14320 339 aaKnown RBP26.85■■□□□ 1.89
MECP2-218ENST00000629277 HMGXB3Q12766 1538 aa26.84■■□□□ 1.89
MECP2-218ENST00000629277 PHLDB1Q86UU1 1377 aa26.84■■□□□ 1.89
Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms