RNA–Protein interactions for RNA: ENST00000621176.1

TRIM6-212, Transcript of tripartite motif containing 6, humanhuman

TSL 5 BASIC

Gene TRIM6, Length 3,005 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM6-212ENST00000621176 NISCHQ9Y2I1 1504 aa17.64■□□□□ 0.41
TRIM6-212ENST00000621176 SHROOM4Q9ULL8 1493 aa15.29■□□□□ 0.04
TRIM6-212ENST00000621176 SUPT5HO00267 1087 aaKnown RBP15.09■□□□□ 0.01
TRIM6-212ENST00000621176 ZCCHC6Q5VYS8 1495 aaKnown RBP14.95□□□□□ -0.02
TRIM6-212ENST00000621176 CCDC180Q9P1Z9 1646 aa14.82□□□□□ -0.04
TRIM6-212ENST00000621176 MYO15BQ96JP2 1530 aa14.76□□□□□ -0.05
TRIM6-212ENST00000621176 CHIC1Q5VXU3 224 aa14.75□□□□□ -0.05
TRIM6-212ENST00000621176 DCAF8L2P0C7V8 631 aa14.67□□□□□ -0.06
TRIM6-212ENST00000621176 HRCP23327 699 aa14.63□□□□□ -0.07
TRIM6-212ENST00000621176 PCGF6Q9BYE7 350 aa14.52□□□□□ -0.08
TRIM6-212ENST00000621176 DCAF1Q9Y4B6 1507 aa14.41□□□□□ -0.1
TRIM6-212ENST00000621176 LOC105371045A0A1W2PR82 267 aa14.36□□□□□ -0.11
TRIM6-212ENST00000621176 PPARGC1BQ86YN6 1023 aaKnown RBP14.36□□□□□ -0.11
TRIM6-212ENST00000621176 TRIM26Q12899 539 aaPredicted RBP14.15□□□□□ -0.15
TRIM6-212ENST00000621176 ABCC9O60706 1549 aa14.13□□□□□ -0.15
TRIM6-212ENST00000621176 RSF1Q96T23 1441 aaPredicted RBP14.07□□□□□ -0.16
TRIM6-212ENST00000621176 SCRIBQ14160 1630 aa14.02□□□□□ -0.17
TRIM6-212ENST00000621176 TRIM41Q8WV44 630 aa13.99□□□□□ -0.17
TRIM6-212ENST00000621176 RB1CC1Q8TDY2 1594 aa13.95□□□□□ -0.18
TRIM6-212ENST00000621176 FAM9AQ8IZU1 332 aaPredicted RBP13.94□□□□□ -0.18
TRIM6-212ENST00000621176 ZEB1P37275 1124 aaPredicted RBP13.88□□□□□ -0.19
TRIM6-212ENST00000621176 EHMT2Q96KQ7 1210 aa13.86□□□□□ -0.19
TRIM6-212ENST00000621176 CECR2Q9BXF3 1484 aa13.8□□□□□ -0.2
TRIM6-212ENST00000621176 MROH2BQ7Z745 1585 aa13.76□□□□□ -0.21
TRIM6-212ENST00000621176 WIZO95785 1651 aa13.69□□□□□ -0.22
TRIM6-212ENST00000621176 NACADO15069 1562 aa13.68□□□□□ -0.22
TRIM6-212ENST00000621176 SCAF1Q9H7N4 1312 aaKnown RBP13.64□□□□□ -0.23
TRIM6-212ENST00000621176 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.59□□□□□ -0.23
TRIM6-212ENST00000621176 BAZ1AQ9NRL2 1556 aaPredicted RBP13.57□□□□□ -0.24
TRIM6-212ENST00000621176 EIF4G1Q04637 1599 aaKnown RBP13.56□□□□□ -0.24
TRIM6-212ENST00000621176 CCER1Q8TC90 406 aaPredicted RBP13.53□□□□□ -0.24
TRIM6-212ENST00000621176 PELP1Q8IZL8 1130 aaKnown RBP13.48□□□□□ -0.25
TRIM6-212ENST00000621176 ABCC8Q09428 1581 aa13.48□□□□□ -0.25
TRIM6-212ENST00000621176 CCDC88BA6NC98 1476 aa13.47□□□□□ -0.25
TRIM6-212ENST00000621176 TTBK1Q5TCY1 1321 aaPredicted RBP13.45□□□□□ -0.26
TRIM6-212ENST00000621176 TOP2AP11388 1531 aaKnown RBP13.43□□□□□ -0.26
TRIM6-212ENST00000621176 WRNQ14191 1432 aaPredicted RBP eCLIP13.43□□□□□ -0.26
TRIM6-212ENST00000621176 CEP162Q5TB80 1403 aa13.41□□□□□ -0.26
TRIM6-212ENST00000621176 NEUROD1Q13562 356 aa13.41□□□□□ -0.26
TRIM6-212ENST00000621176 SOGA1O94964 1423 aa13.41□□□□□ -0.26
TRIM6-212ENST00000621176 ACIN1Q9UKV3 1341 aaKnown RBP13.4□□□□□ -0.26
TRIM6-212ENST00000621176 SMARCA2P51531 1590 aa13.39□□□□□ -0.27
TRIM6-212ENST00000621176 DIEXFQ68CQ4 756 aaKnown RBP13.38□□□□□ -0.27
TRIM6-212ENST00000621176 SMARCA4P51532 1647 aa13.38□□□□□ -0.27
TRIM6-212ENST00000621176 TNIKQ9UKE5 1360 aa13.36□□□□□ -0.27
TRIM6-212ENST00000621176 RUSC2Q8N2Y8 1516 aa13.34□□□□□ -0.27
TRIM6-212ENST00000621176 CSRNP3Q8WYN3 585 aa13.33□□□□□ -0.28
TRIM6-212ENST00000621176 UBTFP17480 764 aaKnown RBP13.31□□□□□ -0.28
TRIM6-212ENST00000621176 GTF3C3Q9Y5Q9 886 aa13.28□□□□□ -0.28
TRIM6-212ENST00000621176 EEA1Q15075 1411 aa13.27□□□□□ -0.28
TRIM6-212ENST00000621176 UNC13AQ9UPW8 1703 aa13.26□□□□□ -0.29
TRIM6-212ENST00000621176 CENPBP07199 599 aaPredicted RBP13.26□□□□□ -0.29
TRIM6-212ENST00000621176 GOLGA3Q08378 1498 aa13.23□□□□□ -0.29
TRIM6-212ENST00000621176 ZNF316A6NFI3 1004 aaPredicted RBP13.22□□□□□ -0.29
TRIM6-212ENST00000621176 PABPN1Q86U42 306 aaKnown RBP eCLIP13.17□□□□□ -0.3
TRIM6-212ENST00000621176 HNRNPUL2Q1KMD3 747 aaKnown RBP13.16□□□□□ -0.3
TRIM6-212ENST00000621176 CEP164Q9UPV0 1460 aa13.13□□□□□ -0.31
TRIM6-212ENST00000621176 SYNJ1O43426 1573 aa13.13□□□□□ -0.31
TRIM6-212ENST00000621176 CLIP1P30622 1438 aa13.11□□□□□ -0.31
TRIM6-212ENST00000621176 YTHDC1Q96MU7 727 aaKnown RBP13.11□□□□□ -0.31
TRIM6-212ENST00000621176 BICRAQ9NZM4 1560 aa13.11□□□□□ -0.31
TRIM6-212ENST00000621176 KIF21BO75037 1637 aa13.1□□□□□ -0.31
TRIM6-212ENST00000621176 MIER1Q8N108 512 aa13.1□□□□□ -0.31
TRIM6-212ENST00000621176 PEG3Q9GZU2 1588 aa13.09□□□□□ -0.31
TRIM6-212ENST00000621176 VPS8Q8N3P4 1428 aa13.07□□□□□ -0.32
TRIM6-212ENST00000621176 RAPGEF2Q9Y4G8 1499 aa13.05□□□□□ -0.32
TRIM6-212ENST00000621176 RANGAP1P46060 587 aaPredicted RBP13.04□□□□□ -0.32
TRIM6-212ENST00000621176 APLP2Q06481 763 aa13.02□□□□□ -0.33
TRIM6-212ENST00000621176 BAZ1BQ9UIG0 1483 aaKnown RBP13.01□□□□□ -0.33
TRIM6-212ENST00000621176 ATAD2BQ9ULI0 1458 aa13.01□□□□□ -0.33
TRIM6-212ENST00000621176 TOP2BQ02880 1626 aa12.92□□□□□ -0.34
TRIM6-212ENST00000621176 DHX57Q6P158 1386 aaKnown RBP12.9□□□□□ -0.34
TRIM6-212ENST00000621176 KANK4Q5T7N3 995 aaPredicted RBP12.9□□□□□ -0.34
TRIM6-212ENST00000621176 ARAP1Q96P48 1450 aa12.88□□□□□ -0.35
TRIM6-212ENST00000621176 CLSPNQ9HAW4 1339 aa12.87□□□□□ -0.35
TRIM6-212ENST00000621176 PRXQ9BXM0 1461 aa12.87□□□□□ -0.35
TRIM6-212ENST00000621176 BIVM-ERCC5R4GMW8 1640 aa12.85□□□□□ -0.35
TRIM6-212ENST00000621176 ERICH3Q5RHP9 1530 aa12.85□□□□□ -0.35
TRIM6-212ENST00000621176 MYT1Q01538 1121 aa12.81□□□□□ -0.36
TRIM6-212ENST00000621176 RRBP1Q9P2E9 1410 aaKnown RBP12.8□□□□□ -0.36
TRIM6-212ENST00000621176 CUX1P39880 1505 aa12.78□□□□□ -0.36
TRIM6-212ENST00000621176 KIF27Q86VH2 1401 aa12.75□□□□□ -0.37
TRIM6-212ENST00000621176 CCNB3Q8WWL7 1395 aa12.75□□□□□ -0.37
TRIM6-212ENST00000621176 ITGAEP38570 1179 aa12.74□□□□□ -0.37
TRIM6-212ENST00000621176 CUX2O14529 1486 aa12.74□□□□□ -0.37
TRIM6-212ENST00000621176 ARHGAP35Q9NRY4 1499 aa12.74□□□□□ -0.37
TRIM6-212ENST00000621176 SUPT16HQ9Y5B9 1047 aaKnown RBP12.74□□□□□ -0.37
TRIM6-212ENST00000621176 NCAPD3P42695 1498 aa12.7□□□□□ -0.38
TRIM6-212ENST00000621176 HMGXB3Q12766 1538 aa12.68□□□□□ -0.38
TRIM6-212ENST00000621176 RAB3GAP2Q9H2M9 1393 aa12.67□□□□□ -0.38
TRIM6-212ENST00000621176 KCNH8Q96L42 1107 aa12.67□□□□□ -0.38
TRIM6-212ENST00000621176 CFTRP13569 1480 aa12.67□□□□□ -0.38
TRIM6-212ENST00000621176 MAPKBP1O60336 1514 aa12.65□□□□□ -0.38
TRIM6-212ENST00000621176 IGF1RP08069 1367 aa12.64□□□□□ -0.39
TRIM6-212ENST00000621176 TIAM1Q13009 1591 aa12.61□□□□□ -0.39
TRIM6-212ENST00000621176 PHLDB1Q86UU1 1377 aa12.59□□□□□ -0.39
TRIM6-212ENST00000621176 SETD5Q9C0A6 1442 aa12.59□□□□□ -0.39
TRIM6-212ENST00000621176 SIN3AQ96ST3 1273 aa12.59□□□□□ -0.39
TRIM6-212ENST00000621176 TSHZ2Q9NRE2 1034 aa12.58□□□□□ -0.4
TRIM6-212ENST00000621176 LRRC9Q6ZRR7 1453 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms