RNA–Protein interactions for RNA: ENST00000617020.1

PCDH9-206, Transcript of protocadherin 9, humanhuman

TSL 5

Gene PCDH9, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-206ENST00000617020 AEBP2Q6ZN18 517 aaPredicted RBP25.12■■□□□ 1.61
PCDH9-206ENST00000617020 CHIC1Q5VXU3 224 aa23.53■■□□□ 1.36
PCDH9-206ENST00000617020 SENP3Q9H4L4 574 aaPredicted RBP21.47■■□□□ 1.03
PCDH9-206ENST00000617020 PHF23Q9BUL5 403 aaPredicted RBP21.13■□□□□ 0.97
PCDH9-206ENST00000617020 FOXD1Q16676 465 aa20.05■□□□□ 0.8
PCDH9-206ENST00000617020 POTEDQ86YR6 584 aa19■□□□□ 0.63
PCDH9-206ENST00000617020 MSH5O43196 834 aa18.89■□□□□ 0.61
PCDH9-206ENST00000617020 PIAS4Q8N2W9 510 aaPredicted RBP18.65■□□□□ 0.58
PCDH9-206ENST00000617020 PLPPR3Q6T4P5 718 aa18.63■□□□□ 0.57
PCDH9-206ENST00000617020 PPP6R1Q9UPN7 881 aa18.49■□□□□ 0.55
PCDH9-206ENST00000617020 ADRA2BP18089 450 aa18.4■□□□□ 0.54
PCDH9-206ENST00000617020 MAPK8IP2Q13387 824 aaPredicted RBP16.99■□□□□ 0.31
PCDH9-206ENST00000617020 DMRT2Q9Y5R5 561 aa16.99■□□□□ 0.31
PCDH9-206ENST00000617020 SCAF1Q9H7N4 1312 aaKnown RBP16.82■□□□□ 0.28
PCDH9-206ENST00000617020 CACNB1Q02641 598 aaPredicted RBP16.39■□□□□ 0.21
PCDH9-206ENST00000617020 PPP4R3CPQ6ZMV5 832 aa16.29■□□□□ 0.2
PCDH9-206ENST00000617020 DCAF8L1A6NGE4 600 aa16.24■□□□□ 0.19
PCDH9-206ENST00000617020 HOXD11P31277 338 aaPredicted RBP16.24■□□□□ 0.19
PCDH9-206ENST00000617020 RNF39Q9H2S5 420 aa16.1■□□□□ 0.17
PCDH9-206ENST00000617020 CNKSR2Q8WXI2 1034 aa16.06■□□□□ 0.16
PCDH9-206ENST00000617020 NISCHQ9Y2I1 1504 aa16.05■□□□□ 0.16
PCDH9-206ENST00000617020 RNF216Q9NWF9 866 aaPredicted RBP16.01■□□□□ 0.15
PCDH9-206ENST00000617020 C1QBPQ07021 282 aaKnown RBP15.83■□□□□ 0.12
PCDH9-206ENST00000617020 DNAJC5BQ9UF47 199 aa15.75■□□□□ 0.11
PCDH9-206ENST00000617020 NCBP3Q53F19 620 aaKnown RBP15.55■□□□□ 0.08
PCDH9-206ENST00000617020 ABCC9O60706 1549 aa15.46■□□□□ 0.07
PCDH9-206ENST00000617020 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.42■□□□□ 0.06
PCDH9-206ENST00000617020 NPM3O75607 178 aaKnown RBP15.34■□□□□ 0.05
PCDH9-206ENST00000617020 U3KPZ7 1027 aaPredicted RBP15.1■□□□□ 0.01
PCDH9-206ENST00000617020 SPINK5Q9NQ38 1064 aaPredicted RBP14.97□□□□□ -0.01
PCDH9-206ENST00000617020 DSG3P32926 999 aa14.95□□□□□ -0.02
PCDH9-206ENST00000617020 CAPN15O75808 1086 aa14.93□□□□□ -0.02
PCDH9-206ENST00000617020 CCDC180Q9P1Z9 1646 aa14.83□□□□□ -0.04
PCDH9-206ENST00000617020 POTEHQ6S545 545 aa14.82□□□□□ -0.04
PCDH9-206ENST00000617020 KCNA4P22459 653 aa14.76□□□□□ -0.05
PCDH9-206ENST00000617020 SLC4A2P04920 1241 aa14.75□□□□□ -0.05
PCDH9-206ENST00000617020 APLP2Q06481 763 aa14.62□□□□□ -0.07
PCDH9-206ENST00000617020 TRHP20396 242 aaPredicted RBP14.61□□□□□ -0.07
PCDH9-206ENST00000617020 ZNF219Q9P2Y4 722 aaPredicted RBP14.6□□□□□ -0.07
PCDH9-206ENST00000617020 ABCB7O75027 752 aa14.57□□□□□ -0.08
PCDH9-206ENST00000617020 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.53□□□□□ -0.08
PCDH9-206ENST00000617020 HNRNPUL2Q1KMD3 747 aaKnown RBP14.53□□□□□ -0.08
PCDH9-206ENST00000617020 SAMD1Q6SPF0 538 aaPredicted RBP14.44□□□□□ -0.1
PCDH9-206ENST00000617020 RB1CC1Q8TDY2 1594 aa14.41□□□□□ -0.1
PCDH9-206ENST00000617020 DNAJC5Q9H3Z4 198 aa14.38□□□□□ -0.11
PCDH9-206ENST00000617020 RBM42Q9BTD8 480 aaKnown RBP14.28□□□□□ -0.12
PCDH9-206ENST00000617020 UNC13AQ9UPW8 1703 aa14.25□□□□□ -0.13
PCDH9-206ENST00000617020 MYCNP04198 464 aaPredicted RBP14.21□□□□□ -0.13
PCDH9-206ENST00000617020 PABPN1Q86U42 306 aaKnown RBP eCLIP14.2□□□□□ -0.14
PCDH9-206ENST00000617020 POLA2Q14181 598 aa14.15□□□□□ -0.14
PCDH9-206ENST00000617020 NACADO15069 1562 aa14.1□□□□□ -0.15
PCDH9-206ENST00000617020 CHRDL2Q6WN34 429 aa14.1□□□□□ -0.15
PCDH9-206ENST00000617020 BICRAQ9NZM4 1560 aa14.05□□□□□ -0.16
PCDH9-206ENST00000617020 CECR2Q9BXF3 1484 aa13.99□□□□□ -0.17
PCDH9-206ENST00000617020 CC2D2AQ9P2K1 1620 aa13.97□□□□□ -0.17
PCDH9-206ENST00000617020 ATF5Q9Y2D1 282 aaPredicted RBP13.9□□□□□ -0.18
PCDH9-206ENST00000617020 AKT1S1Q96B36 256 aa13.88□□□□□ -0.19
PCDH9-206ENST00000617020 FOXD4L1Q9NU39 408 aa13.87□□□□□ -0.19
PCDH9-206ENST00000617020 ZBTB12Q9Y330 459 aaPredicted RBP13.86□□□□□ -0.19
PCDH9-206ENST00000617020 SLC4A1APQ9BWU0 796 aaKnown RBP13.85□□□□□ -0.19
PCDH9-206ENST00000617020 EIF4G1Q04637 1599 aaKnown RBP13.75□□□□□ -0.21
PCDH9-206ENST00000617020 DCAF8L2P0C7V8 631 aa13.75□□□□□ -0.21
PCDH9-206ENST00000617020 REM2Q8IYK8 340 aaPredicted RBP13.75□□□□□ -0.21
PCDH9-206ENST00000617020 OSCARQ8IYS5 282 aa13.74□□□□□ -0.21
PCDH9-206ENST00000617020 SP7Q8TDD2 431 aaPredicted RBP13.74□□□□□ -0.21
PCDH9-206ENST00000617020 SHROOM4Q9ULL8 1493 aa13.73□□□□□ -0.21
PCDH9-206ENST00000617020 PIP4P2Q8N4L2 257 aa13.7□□□□□ -0.22
PCDH9-206ENST00000617020 MYO15BQ96JP2 1530 aa13.64□□□□□ -0.23
PCDH9-206ENST00000617020 PITPNM1O00562 1244 aa13.62□□□□□ -0.23
PCDH9-206ENST00000617020 CUX2O14529 1486 aa13.61□□□□□ -0.23
PCDH9-206ENST00000617020 ZBTB22O15209 634 aa13.57□□□□□ -0.24
PCDH9-206ENST00000617020 FXR2P51116 673 aaKnown RBP eCLIP13.56□□□□□ -0.24
PCDH9-206ENST00000617020 HAX1O00165 279 aa13.5□□□□□ -0.25
PCDH9-206ENST00000617020 ATXN8OSP0DMR3 200 aa13.49□□□□□ -0.25
PCDH9-206ENST00000617020 TRIM41Q8WV44 630 aa13.46□□□□□ -0.25
PCDH9-206ENST00000617020 SCRIBQ14160 1630 aa13.45□□□□□ -0.26
PCDH9-206ENST00000617020 SPDYE2BA6NHP3 402 aa13.41□□□□□ -0.26
PCDH9-206ENST00000617020 SPDYE6P0CI01 402 aa13.41□□□□□ -0.26
PCDH9-206ENST00000617020 SPDYE2Q495Y8 402 aa13.41□□□□□ -0.26
PCDH9-206ENST00000617020 ERCC6Q03468 1493 aa13.38□□□□□ -0.27
PCDH9-206ENST00000617020 FBLN2P98095 1184 aa13.37□□□□□ -0.27
PCDH9-206ENST00000617020 EVX2Q03828 476 aa13.33□□□□□ -0.28
PCDH9-206ENST00000617020 MKRN4PQ13434 485 aaPredicted RBP13.26□□□□□ -0.29
PCDH9-206ENST00000617020 SPDYE1Q8NFV5 336 aaPredicted RBP13.25□□□□□ -0.29
PCDH9-206ENST00000617020 PRKAR2AP13861 404 aaKnown RBP13.24□□□□□ -0.29
PCDH9-206ENST00000617020 SSUH2Q9Y2M2 353 aa13.22□□□□□ -0.29
PCDH9-206ENST00000617020 CLEC11AQ9Y240 323 aa13.21□□□□□ -0.29
PCDH9-206ENST00000617020 DCAF1Q9Y4B6 1507 aa13.2□□□□□ -0.3
PCDH9-206ENST00000617020 THOC2Q8NI27 1593 aaKnown RBP13.17□□□□□ -0.3
PCDH9-206ENST00000617020 ZCCHC6Q5VYS8 1495 aaKnown RBP13.16□□□□□ -0.3
PCDH9-206ENST00000617020 ZNF692Q9BU19 519 aaPredicted RBP13.16□□□□□ -0.3
PCDH9-206ENST00000617020 C19orf67A6NJJ6 358 aa13.14□□□□□ -0.31
PCDH9-206ENST00000617020 NESP48681 1621 aa13.09□□□□□ -0.31
PCDH9-206ENST00000617020 GABBR2O75899 941 aa13.01□□□□□ -0.33
PCDH9-206ENST00000617020 CHADLQ6NUI6 762 aa13.01□□□□□ -0.33
PCDH9-206ENST00000617020 KIF21AQ7Z4S6 1674 aa13□□□□□ -0.33
PCDH9-206ENST00000617020 SMARCA2P51531 1590 aa13□□□□□ -0.33
PCDH9-206ENST00000617020 NCAPD3P42695 1498 aa12.98□□□□□ -0.33
PCDH9-206ENST00000617020 BAZ1AQ9NRL2 1556 aaPredicted RBP12.97□□□□□ -0.33
PCDH9-206ENST00000617020 PRR29P0C7W0 189 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 335.9 ms