RNA–Protein interactions for RNA: ENST00000607272.2

MSH6-212, Transcript of mutS homolog 6, humanhuman

TSL 2

Gene MSH6, Length 2,219 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-212ENST00000607272 NISCHQ9Y2I1 1504 aa24.79■■□□□ 1.56
MSH6-212ENST00000607272 CHIC1Q5VXU3 224 aa24.26■■□□□ 1.47
MSH6-212ENST00000607272 AEBP2Q6ZN18 517 aaPredicted RBP23.6■■□□□ 1.37
MSH6-212ENST00000607272 PHF23Q9BUL5 403 aaPredicted RBP21.76■■□□□ 1.07
MSH6-212ENST00000607272 SHROOM4Q9ULL8 1493 aa21.33■■□□□ 1
MSH6-212ENST00000607272 SUPT5HO00267 1087 aaKnown RBP21.14■□□□□ 0.98
MSH6-212ENST00000607272 ZCCHC6Q5VYS8 1495 aaKnown RBP21.04■□□□□ 0.96
MSH6-212ENST00000607272 CCDC180Q9P1Z9 1646 aa20.88■□□□□ 0.93
MSH6-212ENST00000607272 HRCP23327 699 aa20.8■□□□□ 0.92
MSH6-212ENST00000607272 MYO15BQ96JP2 1530 aa20.7■□□□□ 0.9
MSH6-212ENST00000607272 PCGF6Q9BYE7 350 aa20.49■□□□□ 0.87
MSH6-212ENST00000607272 EHMT2Q96KQ7 1210 aa20.46■□□□□ 0.87
MSH6-212ENST00000607272 DCAF8L2P0C7V8 631 aa20.42■□□□□ 0.86
MSH6-212ENST00000607272 DCAF1Q9Y4B6 1507 aa20.39■□□□□ 0.85
MSH6-212ENST00000607272 PLPPR3Q6T4P5 718 aa20.3■□□□□ 0.84
MSH6-212ENST00000607272 PPARGC1BQ86YN6 1023 aaKnown RBP20.19■□□□□ 0.82
MSH6-212ENST00000607272 LOC105371045A0A1W2PR82 267 aa20.13■□□□□ 0.81
MSH6-212ENST00000607272 TRIM26Q12899 539 aaPredicted RBP20.08■□□□□ 0.81
MSH6-212ENST00000607272 ABCC9O60706 1549 aa19.9■□□□□ 0.78
MSH6-212ENST00000607272 ZEB1P37275 1124 aaPredicted RBP19.88■□□□□ 0.77
MSH6-212ENST00000607272 RSF1Q96T23 1441 aaPredicted RBP19.77■□□□□ 0.75
MSH6-212ENST00000607272 KCNA4P22459 653 aa19.76■□□□□ 0.75
MSH6-212ENST00000607272 TRIM41Q8WV44 630 aa19.72■□□□□ 0.75
MSH6-212ENST00000607272 RB1CC1Q8TDY2 1594 aa19.61■□□□□ 0.73
MSH6-212ENST00000607272 SCRIBQ14160 1630 aa19.59■□□□□ 0.73
MSH6-212ENST00000607272 PELP1Q8IZL8 1130 aaKnown RBP19.57■□□□□ 0.72
MSH6-212ENST00000607272 FAM9AQ8IZU1 332 aaPredicted RBP19.49■□□□□ 0.71
MSH6-212ENST00000607272 ADRA2BP18089 450 aa19.4■□□□□ 0.7
MSH6-212ENST00000607272 SLC24A1O60721 1099 aa19.39■□□□□ 0.69
MSH6-212ENST00000607272 CSRNP3Q8WYN3 585 aa19.37■□□□□ 0.69
MSH6-212ENST00000607272 SENP3Q9H4L4 574 aaPredicted RBP19.37■□□□□ 0.69
MSH6-212ENST00000607272 SCAF1Q9H7N4 1312 aaKnown RBP19.35■□□□□ 0.69
MSH6-212ENST00000607272 CECR2Q9BXF3 1484 aa19.27■□□□□ 0.68
MSH6-212ENST00000607272 NACADO15069 1562 aa19.26■□□□□ 0.67
MSH6-212ENST00000607272 MROH2BQ7Z745 1585 aa19.26■□□□□ 0.67
MSH6-212ENST00000607272 CCER1Q8TC90 406 aaPredicted RBP19.15■□□□□ 0.66
MSH6-212ENST00000607272 WIZO95785 1651 aa19.14■□□□□ 0.66
MSH6-212ENST00000607272 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.13■□□□□ 0.65
MSH6-212ENST00000607272 BAZ1AQ9NRL2 1556 aaPredicted RBP19.1■□□□□ 0.65
MSH6-212ENST00000607272 ACIN1Q9UKV3 1341 aaKnown RBP19.1■□□□□ 0.65
MSH6-212ENST00000607272 EIF4G1Q04637 1599 aaKnown RBP19.06■□□□□ 0.64
MSH6-212ENST00000607272 WRNQ14191 1432 aaPredicted RBP eCLIP19.04■□□□□ 0.64
MSH6-212ENST00000607272 DIEXFQ68CQ4 756 aaKnown RBP19■□□□□ 0.63
MSH6-212ENST00000607272 CENPBP07199 599 aaPredicted RBP18.98■□□□□ 0.63
MSH6-212ENST00000607272 NEUROD1Q13562 356 aa18.98■□□□□ 0.63
MSH6-212ENST00000607272 SLC4A1APQ9BWU0 796 aaKnown RBP18.91■□□□□ 0.62
MSH6-212ENST00000607272 CEP162Q5TB80 1403 aa18.91■□□□□ 0.62
MSH6-212ENST00000607272 TOP2AP11388 1531 aaKnown RBP18.9■□□□□ 0.62
MSH6-212ENST00000607272 TNIKQ9UKE5 1360 aa18.9■□□□□ 0.62
MSH6-212ENST00000607272 CCDC88BA6NC98 1476 aa18.88■□□□□ 0.61
MSH6-212ENST00000607272 EEA1Q15075 1411 aa18.86■□□□□ 0.61
MSH6-212ENST00000607272 GTF3C3Q9Y5Q9 886 aa18.85■□□□□ 0.61
MSH6-212ENST00000607272 ABCC8Q09428 1581 aa18.85■□□□□ 0.61
MSH6-212ENST00000607272 SMARCA2P51531 1590 aa18.79■□□□□ 0.6
MSH6-212ENST00000607272 SOGA1O94964 1423 aa18.79■□□□□ 0.6
MSH6-212ENST00000607272 PPP6R1Q9UPN7 881 aa18.78■□□□□ 0.6
MSH6-212ENST00000607272 SMARCA4P51532 1647 aa18.78■□□□□ 0.6
MSH6-212ENST00000607272 ZNF316A6NFI3 1004 aaPredicted RBP18.77■□□□□ 0.6
MSH6-212ENST00000607272 TTBK1Q5TCY1 1321 aaPredicted RBP18.76■□□□□ 0.59
MSH6-212ENST00000607272 RTN4Q9NQC3 1192 aaKnown RBP18.75■□□□□ 0.59
MSH6-212ENST00000607272 MYT1Q01538 1121 aa18.74■□□□□ 0.59
MSH6-212ENST00000607272 UBTFP17480 764 aaKnown RBP18.72■□□□□ 0.59
MSH6-212ENST00000607272 GOLGA3Q08378 1498 aa18.69■□□□□ 0.58
MSH6-212ENST00000607272 RUSC2Q8N2Y8 1516 aa18.64■□□□□ 0.57
MSH6-212ENST00000607272 CEP164Q9UPV0 1460 aa18.57■□□□□ 0.56
MSH6-212ENST00000607272 KIF21BO75037 1637 aa18.51■□□□□ 0.55
MSH6-212ENST00000607272 MIER1Q8N108 512 aa18.5■□□□□ 0.55
MSH6-212ENST00000607272 CLIP1P30622 1438 aa18.49■□□□□ 0.55
MSH6-212ENST00000607272 HNRNPUL2Q1KMD3 747 aaKnown RBP18.49■□□□□ 0.55
MSH6-212ENST00000607272 YTHDC1Q96MU7 727 aaKnown RBP18.49■□□□□ 0.55
MSH6-212ENST00000607272 UNC13AQ9UPW8 1703 aa18.48■□□□□ 0.55
MSH6-212ENST00000607272 VPS8Q8N3P4 1428 aa18.47■□□□□ 0.55
MSH6-212ENST00000607272 BAZ1BQ9UIG0 1483 aaKnown RBP18.44■□□□□ 0.54
MSH6-212ENST00000607272 APLP2Q06481 763 aa18.44■□□□□ 0.54
MSH6-212ENST00000607272 PEG3Q9GZU2 1588 aa18.43■□□□□ 0.54
MSH6-212ENST00000607272 SYNJ1O43426 1573 aa18.4■□□□□ 0.54
MSH6-212ENST00000607272 CLSPNQ9HAW4 1339 aa18.38■□□□□ 0.53
MSH6-212ENST00000607272 AMER1Q5JTC6 1135 aaPredicted RBP18.34■□□□□ 0.53
MSH6-212ENST00000607272 ZBTB22O15209 634 aa18.33■□□□□ 0.53
MSH6-212ENST00000607272 RAPGEF2Q9Y4G8 1499 aa18.31■□□□□ 0.52
MSH6-212ENST00000607272 BICRAQ9NZM4 1560 aa18.28■□□□□ 0.52
MSH6-212ENST00000607272 PABPN1Q86U42 306 aaKnown RBP eCLIP18.26■□□□□ 0.51
MSH6-212ENST00000607272 ATAD2BQ9ULI0 1458 aa18.23■□□□□ 0.51
MSH6-212ENST00000607272 DHX57Q6P158 1386 aaKnown RBP18.22■□□□□ 0.51
MSH6-212ENST00000607272 PPP4R3CPQ6ZMV5 832 aa18.21■□□□□ 0.5
MSH6-212ENST00000607272 TOP2BQ02880 1626 aa18.19■□□□□ 0.5
MSH6-212ENST00000607272 ERICH3Q5RHP9 1530 aa18.17■□□□□ 0.5
MSH6-212ENST00000607272 RANGAP1P46060 587 aaPredicted RBP18.16■□□□□ 0.5
MSH6-212ENST00000607272 PRXQ9BXM0 1461 aa18.13■□□□□ 0.49
MSH6-212ENST00000607272 ARAP1Q96P48 1450 aa18.11■□□□□ 0.49
MSH6-212ENST00000607272 RRBP1Q9P2E9 1410 aaKnown RBP18.1■□□□□ 0.49
MSH6-212ENST00000607272 BIVM-ERCC5R4GMW8 1640 aa18.09■□□□□ 0.49
MSH6-212ENST00000607272 SUPT16HQ9Y5B9 1047 aaKnown RBP18.08■□□□□ 0.49
MSH6-212ENST00000607272 CUX2O14529 1486 aa18.07■□□□□ 0.48
MSH6-212ENST00000607272 KANK4Q5T7N3 995 aaPredicted RBP18.07■□□□□ 0.48
MSH6-212ENST00000607272 FOXD1Q16676 465 aa18.07■□□□□ 0.48
MSH6-212ENST00000607272 CCNB3Q8WWL7 1395 aa18.01■□□□□ 0.47
MSH6-212ENST00000607272 NPM3O75607 178 aaKnown RBP18■□□□□ 0.47
MSH6-212ENST00000607272 KIF27Q86VH2 1401 aa17.98■□□□□ 0.47
MSH6-212ENST00000607272 NCBP3Q53F19 620 aaKnown RBP17.91■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms