RNA–Protein interactions for RNA: ENST00000601372.5

ZNF558-207, Transcript of zinc finger protein 558, humanhuman

APPRIS P1 TSL 2 BASIC

Gene ZNF558, Length 7,032 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF558-207ENST00000601372 NISCHQ9Y2I1 1504 aa20.47■□□□□ 0.87
ZNF558-207ENST00000601372 DCAF8L2P0C7V8 631 aa20.42■□□□□ 0.86
ZNF558-207ENST00000601372 SHROOM4Q9ULL8 1493 aa18.9■□□□□ 0.62
ZNF558-207ENST00000601372 SUPT5HO00267 1087 aaKnown RBP18.69■□□□□ 0.58
ZNF558-207ENST00000601372 ABCC9O60706 1549 aa18.13■□□□□ 0.49
ZNF558-207ENST00000601372 EHMT2Q96KQ7 1210 aa18.05■□□□□ 0.48
ZNF558-207ENST00000601372 PABPN1Q86U42 306 aaKnown RBP eCLIP17.71■□□□□ 0.43
ZNF558-207ENST00000601372 FAM9AQ8IZU1 332 aaPredicted RBP17.61■□□□□ 0.41
ZNF558-207ENST00000601372 PCGF6Q9BYE7 350 aa17.53■□□□□ 0.4
ZNF558-207ENST00000601372 RANGAP1P46060 587 aaPredicted RBP17.51■□□□□ 0.39
ZNF558-207ENST00000601372 APLP2Q06481 763 aa17.44■□□□□ 0.38
ZNF558-207ENST00000601372 TRIM41Q8WV44 630 aa17.37■□□□□ 0.37
ZNF558-207ENST00000601372 CCDC180Q9P1Z9 1646 aa17.36■□□□□ 0.37
ZNF558-207ENST00000601372 ATP1B4Q9UN42 357 aaPredicted RBP17.35■□□□□ 0.37
ZNF558-207ENST00000601372 TTBK1Q5TCY1 1321 aaPredicted RBP17.31■□□□□ 0.36
ZNF558-207ENST00000601372 SCRIBQ14160 1630 aa17.17■□□□□ 0.34
ZNF558-207ENST00000601372 UBTFP17480 764 aaKnown RBP17.16■□□□□ 0.34
ZNF558-207ENST00000601372 RB1CC1Q8TDY2 1594 aa17.01■□□□□ 0.31
ZNF558-207ENST00000601372 PPARGC1BQ86YN6 1023 aaKnown RBP16.98■□□□□ 0.31
ZNF558-207ENST00000601372 LOC105371045A0A1W2PR82 267 aa16.97■□□□□ 0.31
ZNF558-207ENST00000601372 CHIC1Q5VXU3 224 aa16.94■□□□□ 0.3
ZNF558-207ENST00000601372 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.92■□□□□ 0.3
ZNF558-207ENST00000601372 HNRNPUL2Q1KMD3 747 aaKnown RBP16.92■□□□□ 0.3
ZNF558-207ENST00000601372 ZCCHC6Q5VYS8 1495 aaKnown RBP16.9■□□□□ 0.3
ZNF558-207ENST00000601372 CCER1Q8TC90 406 aaPredicted RBP16.86■□□□□ 0.29
ZNF558-207ENST00000601372 MYT1LQ9UL68 1186 aa16.85■□□□□ 0.29
ZNF558-207ENST00000601372 HRCP23327 699 aa16.84■□□□□ 0.29
ZNF558-207ENST00000601372 FBLN2P98095 1184 aa16.82■□□□□ 0.28
ZNF558-207ENST00000601372 ZEB1P37275 1124 aaPredicted RBP16.79■□□□□ 0.28
ZNF558-207ENST00000601372 TRIM26Q12899 539 aaPredicted RBP16.76■□□□□ 0.27
ZNF558-207ENST00000601372 NACADO15069 1562 aa16.75■□□□□ 0.27
ZNF558-207ENST00000601372 YTHDC1Q96MU7 727 aaKnown RBP16.59■□□□□ 0.25
ZNF558-207ENST00000601372 CENPBP07199 599 aaPredicted RBP16.54■□□□□ 0.24
ZNF558-207ENST00000601372 PELP1Q8IZL8 1130 aaKnown RBP16.5■□□□□ 0.23
ZNF558-207ENST00000601372 ITGAEP38570 1179 aa16.49■□□□□ 0.23
ZNF558-207ENST00000601372 ERCC6Q03468 1493 aa16.34■□□□□ 0.21
ZNF558-207ENST00000601372 BAZ1BQ9UIG0 1483 aaKnown RBP16.32■□□□□ 0.2
ZNF558-207ENST00000601372 ARID3CA6NKF2 412 aa16.32■□□□□ 0.2
ZNF558-207ENST00000601372 P3H3Q8IVL6 736 aa16.3■□□□□ 0.2
ZNF558-207ENST00000601372 MYO15BQ96JP2 1530 aa16.23■□□□□ 0.19
ZNF558-207ENST00000601372 FAM50AQ14320 339 aaKnown RBP16.21■□□□□ 0.19
ZNF558-207ENST00000601372 DCAF1Q9Y4B6 1507 aa16.19■□□□□ 0.18
ZNF558-207ENST00000601372 CHMP7Q8WUX9 453 aaPredicted RBP16.18■□□□□ 0.18
ZNF558-207ENST00000601372 NPM1P06748 294 aaKnown RBP eCLIP16.16■□□□□ 0.18
ZNF558-207ENST00000601372 BAZ1AQ9NRL2 1556 aaPredicted RBP16.12■□□□□ 0.17
ZNF558-207ENST00000601372 DIEXFQ68CQ4 756 aaKnown RBP16.11■□□□□ 0.17
ZNF558-207ENST00000601372 CSRNP3Q8WYN3 585 aa16.09■□□□□ 0.17
ZNF558-207ENST00000601372 RSF1Q96T23 1441 aaPredicted RBP16.08■□□□□ 0.16
ZNF558-207ENST00000601372 POLR3GLQ9BT43 218 aa16.06■□□□□ 0.16
ZNF558-207ENST00000601372 CECR2Q9BXF3 1484 aa16.06■□□□□ 0.16
ZNF558-207ENST00000601372 TRIM52Q96A61 297 aa16.04■□□□□ 0.16
ZNF558-207ENST00000601372 ZNF777Q9ULD5 760 aaPredicted RBP16.04■□□□□ 0.16
ZNF558-207ENST00000601372 PLPPR3Q6T4P5 718 aa16.03■□□□□ 0.16
ZNF558-207ENST00000601372 ERICH6Q7L0X2 663 aa15.98■□□□□ 0.15
ZNF558-207ENST00000601372 SLC4A1APQ9BWU0 796 aaKnown RBP15.97■□□□□ 0.15
ZNF558-207ENST00000601372 CDK11AQ9UQ88 783 aaPredicted RBP15.97■□□□□ 0.15
ZNF558-207ENST00000601372 NEFLP07196 543 aa15.96■□□□□ 0.15
ZNF558-207ENST00000601372 SMARCA2P51531 1590 aa15.95■□□□□ 0.14
ZNF558-207ENST00000601372 BCANQ96GW7 911 aa15.93■□□□□ 0.14
ZNF558-207ENST00000601372 ESF1Q9H501 851 aaKnown RBP15.93■□□□□ 0.14
ZNF558-207ENST00000601372 GTF3C3Q9Y5Q9 886 aa15.88■□□□□ 0.13
ZNF558-207ENST00000601372 MROH2BQ7Z745 1585 aa15.87■□□□□ 0.13
ZNF558-207ENST00000601372 CNGB1Q14028 1251 aaPredicted RBP15.86■□□□□ 0.13
ZNF558-207ENST00000601372 PDS5BQ9NTI5 1447 aa15.83■□□□□ 0.12
ZNF558-207ENST00000601372 WRNQ14191 1432 aaPredicted RBP eCLIP15.82■□□□□ 0.12
ZNF558-207ENST00000601372 NEUROD1Q13562 356 aa15.81■□□□□ 0.12
ZNF558-207ENST00000601372 WIZO95785 1651 aa15.81■□□□□ 0.12
ZNF558-207ENST00000601372 KCNH8Q96L42 1107 aa15.8■□□□□ 0.12
ZNF558-207ENST00000601372 TRHP20396 242 aaPredicted RBP15.77■□□□□ 0.11
ZNF558-207ENST00000601372 ZNF316A6NFI3 1004 aaPredicted RBP15.76■□□□□ 0.11
ZNF558-207ENST00000601372 ZNF326Q5BKZ1 582 aaKnown RBP15.76■□□□□ 0.11
ZNF558-207ENST00000601372 STAG3Q9UJ98 1225 aa15.72■□□□□ 0.11
ZNF558-207ENST00000601372 CCDC88BA6NC98 1476 aa15.72■□□□□ 0.11
ZNF558-207ENST00000601372 KIF27Q86VH2 1401 aa15.72■□□□□ 0.11
ZNF558-207ENST00000601372 SMARCA4P51532 1647 aa15.72■□□□□ 0.11
ZNF558-207ENST00000601372 EIF4G1Q04637 1599 aaKnown RBP15.71■□□□□ 0.1
ZNF558-207ENST00000601372 ACIN1Q9UKV3 1341 aaKnown RBP15.7■□□□□ 0.1
ZNF558-207ENST00000601372 CHGAP10645 457 aaKnown RBP15.68■□□□□ 0.1
ZNF558-207ENST00000601372 ATAD2BQ9ULI0 1458 aa15.67■□□□□ 0.1
ZNF558-207ENST00000601372 TOP2AP11388 1531 aaKnown RBP15.65■□□□□ 0.1
ZNF558-207ENST00000601372 CUX2O14529 1486 aa15.64■□□□□ 0.09
ZNF558-207ENST00000601372 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.64■□□□□ 0.09
ZNF558-207ENST00000601372 CEP164Q9UPV0 1460 aa15.63■□□□□ 0.09
ZNF558-207ENST00000601372 ARID4BQ4LE39 1312 aaPredicted RBP15.62■□□□□ 0.09
ZNF558-207ENST00000601372 MYT1Q01538 1121 aa15.62■□□□□ 0.09
ZNF558-207ENST00000601372 MTUS2Q5JR59 1369 aa15.61■□□□□ 0.09
ZNF558-207ENST00000601372 PLEKHD1A6NEE1 506 aa15.61■□□□□ 0.09
ZNF558-207ENST00000601372 CADPSQ9ULU8 1353 aa15.61■□□□□ 0.09
ZNF558-207ENST00000601372 SOGA1O94964 1423 aa15.61■□□□□ 0.09
ZNF558-207ENST00000601372 CHIC2Q9UKJ5 165 aa15.6■□□□□ 0.09
ZNF558-207ENST00000601372 ABCC8Q09428 1581 aa15.57■□□□□ 0.08
ZNF558-207ENST00000601372 SCAF1Q9H7N4 1312 aaKnown RBP15.56■□□□□ 0.08
ZNF558-207ENST00000601372 TSPY4P0CV99 314 aa15.55■□□□□ 0.08
ZNF558-207ENST00000601372 TSPY10P0CW01 314 aa15.55■□□□□ 0.08
ZNF558-207ENST00000601372 GOLGA3Q08378 1498 aa15.55■□□□□ 0.08
ZNF558-207ENST00000601372 CC2D2AQ9P2K1 1620 aa15.55■□□□□ 0.08
ZNF558-207ENST00000601372 TDRD9Q8NDG6 1382 aaKnown RBP15.55■□□□□ 0.08
ZNF558-207ENST00000601372 CLIP1P30622 1438 aa15.54■□□□□ 0.08
ZNF558-207ENST00000601372 EEA1Q15075 1411 aa15.52■□□□□ 0.07
ZNF558-207ENST00000601372 FANCD2Q9BXW9 1451 aa15.51■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 86 ms