RNA–Protein interactions for RNA: ENST00000601011.1

NOTCH3-206, Transcript of notch 3, humanhuman

TSL 5

Gene NOTCH3, Length 3,858 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NOTCH3-206ENST00000601011 NISCHQ9Y2I1 1504 aa24.66■■□□□ 1.54
NOTCH3-206ENST00000601011 DCAF8L2P0C7V8 631 aa23.3■■□□□ 1.32
NOTCH3-206ENST00000601011 SHROOM4Q9ULL8 1493 aa22.86■■□□□ 1.25
NOTCH3-206ENST00000601011 SUPT5HO00267 1087 aaKnown RBP22.53■■□□□ 1.2
NOTCH3-206ENST00000601011 EHMT2Q96KQ7 1210 aa21.75■■□□□ 1.07
NOTCH3-206ENST00000601011 FAM9AQ8IZU1 332 aaPredicted RBP21.19■□□□□ 0.98
NOTCH3-206ENST00000601011 LOC105371045A0A1W2PR82 267 aa20.86■□□□□ 0.93
NOTCH3-206ENST00000601011 TTBK1Q5TCY1 1321 aaPredicted RBP20.86■□□□□ 0.93
NOTCH3-206ENST00000601011 PCGF6Q9BYE7 350 aa20.83■□□□□ 0.93
NOTCH3-206ENST00000601011 CHIC1Q5VXU3 224 aa20.8■□□□□ 0.92
NOTCH3-206ENST00000601011 ABCC9O60706 1549 aa20.78■□□□□ 0.92
NOTCH3-206ENST00000601011 PPARGC1BQ86YN6 1023 aaKnown RBP20.65■□□□□ 0.9
NOTCH3-206ENST00000601011 ZCCHC6Q5VYS8 1495 aaKnown RBP20.59■□□□□ 0.89
NOTCH3-206ENST00000601011 RANGAP1P46060 587 aaPredicted RBP20.55■□□□□ 0.88
NOTCH3-206ENST00000601011 TRIM41Q8WV44 630 aa20.55■□□□□ 0.88
NOTCH3-206ENST00000601011 PABPN1Q86U42 306 aaKnown RBP eCLIP20.46■□□□□ 0.87
NOTCH3-206ENST00000601011 MYO15BQ96JP2 1530 aa20.26■□□□□ 0.83
NOTCH3-206ENST00000601011 SCRIBQ14160 1630 aa20.24■□□□□ 0.83
NOTCH3-206ENST00000601011 CCDC180Q9P1Z9 1646 aa20.19■□□□□ 0.82
NOTCH3-206ENST00000601011 UBTFP17480 764 aaKnown RBP20.01■□□□□ 0.79
NOTCH3-206ENST00000601011 HRCP23327 699 aa19.88■□□□□ 0.77
NOTCH3-206ENST00000601011 CECR2Q9BXF3 1484 aa19.8■□□□□ 0.76
NOTCH3-206ENST00000601011 RSF1Q96T23 1441 aaPredicted RBP19.79■□□□□ 0.76
NOTCH3-206ENST00000601011 TRIM26Q12899 539 aaPredicted RBP19.74■□□□□ 0.75
NOTCH3-206ENST00000601011 CCER1Q8TC90 406 aaPredicted RBP19.74■□□□□ 0.75
NOTCH3-206ENST00000601011 ATP1B4Q9UN42 357 aaPredicted RBP19.73■□□□□ 0.75
NOTCH3-206ENST00000601011 APLP2Q06481 763 aa19.69■□□□□ 0.74
NOTCH3-206ENST00000601011 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.67■□□□□ 0.74
NOTCH3-206ENST00000601011 HNRNPUL2Q1KMD3 747 aaKnown RBP19.55■□□□□ 0.72
NOTCH3-206ENST00000601011 ITGAEP38570 1179 aa19.53■□□□□ 0.72
NOTCH3-206ENST00000601011 RB1CC1Q8TDY2 1594 aa19.48■□□□□ 0.71
NOTCH3-206ENST00000601011 MROH2BQ7Z745 1585 aa19.45■□□□□ 0.7
NOTCH3-206ENST00000601011 DCAF1Q9Y4B6 1507 aa19.4■□□□□ 0.7
NOTCH3-206ENST00000601011 YTHDC1Q96MU7 727 aaKnown RBP19.37■□□□□ 0.69
NOTCH3-206ENST00000601011 CSRNP3Q8WYN3 585 aa19.26■□□□□ 0.67
NOTCH3-206ENST00000601011 WIZO95785 1651 aa19.26■□□□□ 0.67
NOTCH3-206ENST00000601011 NACADO15069 1562 aa19.23■□□□□ 0.67
NOTCH3-206ENST00000601011 P3H3Q8IVL6 736 aa19.19■□□□□ 0.66
NOTCH3-206ENST00000601011 ABCC8Q09428 1581 aa19.18■□□□□ 0.66
NOTCH3-206ENST00000601011 ZEB1P37275 1124 aaPredicted RBP19.13■□□□□ 0.65
NOTCH3-206ENST00000601011 SOGA1O94964 1423 aa19.13■□□□□ 0.65
NOTCH3-206ENST00000601011 PELP1Q8IZL8 1130 aaKnown RBP19.08■□□□□ 0.65
NOTCH3-206ENST00000601011 ARID3CA6NKF2 412 aa19.08■□□□□ 0.64
NOTCH3-206ENST00000601011 CCDC88BA6NC98 1476 aa19.06■□□□□ 0.64
NOTCH3-206ENST00000601011 RUSC2Q8N2Y8 1516 aa18.98■□□□□ 0.63
NOTCH3-206ENST00000601011 CNGB1Q14028 1251 aaPredicted RBP18.95■□□□□ 0.62
NOTCH3-206ENST00000601011 BAZ1AQ9NRL2 1556 aaPredicted RBP18.95■□□□□ 0.62
NOTCH3-206ENST00000601011 CENPBP07199 599 aaPredicted RBP18.93■□□□□ 0.62
NOTCH3-206ENST00000601011 FAM50AQ14320 339 aaKnown RBP18.89■□□□□ 0.61
NOTCH3-206ENST00000601011 SCAF1Q9H7N4 1312 aaKnown RBP18.88■□□□□ 0.61
NOTCH3-206ENST00000601011 CEP162Q5TB80 1403 aa18.86■□□□□ 0.61
NOTCH3-206ENST00000601011 GTF3C3Q9Y5Q9 886 aa18.85■□□□□ 0.61
NOTCH3-206ENST00000601011 WRNQ14191 1432 aaPredicted RBP eCLIP18.85■□□□□ 0.61
NOTCH3-206ENST00000601011 DIEXFQ68CQ4 756 aaKnown RBP18.84■□□□□ 0.61
NOTCH3-206ENST00000601011 BAZ1BQ9UIG0 1483 aaKnown RBP18.82■□□□□ 0.6
NOTCH3-206ENST00000601011 NEUROD1Q13562 356 aa18.8■□□□□ 0.6
NOTCH3-206ENST00000601011 FBLN2P98095 1184 aa18.76■□□□□ 0.59
NOTCH3-206ENST00000601011 SMARCA4P51532 1647 aa18.7■□□□□ 0.58
NOTCH3-206ENST00000601011 CLIP1P30622 1438 aa18.68■□□□□ 0.58
NOTCH3-206ENST00000601011 POLR3GLQ9BT43 218 aa18.65■□□□□ 0.58
NOTCH3-206ENST00000601011 TOP2AP11388 1531 aaKnown RBP18.63■□□□□ 0.57
NOTCH3-206ENST00000601011 KANK4Q5T7N3 995 aaPredicted RBP18.6■□□□□ 0.57
NOTCH3-206ENST00000601011 HIRIP3Q9BW71 556 aaPredicted RBP18.6■□□□□ 0.57
NOTCH3-206ENST00000601011 DNAJC5BQ9UF47 199 aa18.6■□□□□ 0.57
NOTCH3-206ENST00000601011 ATAD2BQ9ULI0 1458 aa18.59■□□□□ 0.57
NOTCH3-206ENST00000601011 SMARCA2P51531 1590 aa18.58■□□□□ 0.56
NOTCH3-206ENST00000601011 TNIKQ9UKE5 1360 aa18.56■□□□□ 0.56
NOTCH3-206ENST00000601011 GOLGA3Q08378 1498 aa18.54■□□□□ 0.56
NOTCH3-206ENST00000601011 ACIN1Q9UKV3 1341 aaKnown RBP18.54■□□□□ 0.56
NOTCH3-206ENST00000601011 RAPGEF2Q9Y4G8 1499 aa18.5■□□□□ 0.55
NOTCH3-206ENST00000601011 TRIM52Q96A61 297 aa18.48■□□□□ 0.55
NOTCH3-206ENST00000601011 ZNF316A6NFI3 1004 aaPredicted RBP18.48■□□□□ 0.55
NOTCH3-206ENST00000601011 CHIC2Q9UKJ5 165 aa18.46■□□□□ 0.55
NOTCH3-206ENST00000601011 BICRAQ9NZM4 1560 aa18.41■□□□□ 0.54
NOTCH3-206ENST00000601011 MIER1Q8N108 512 aa18.41■□□□□ 0.54
NOTCH3-206ENST00000601011 ZNF326Q5BKZ1 582 aaKnown RBP18.4■□□□□ 0.54
NOTCH3-206ENST00000601011 BCANQ96GW7 911 aa18.39■□□□□ 0.53
NOTCH3-206ENST00000601011 CEP164Q9UPV0 1460 aa18.39■□□□□ 0.53
NOTCH3-206ENST00000601011 ZNF777Q9ULD5 760 aaPredicted RBP18.38■□□□□ 0.53
NOTCH3-206ENST00000601011 CUX2O14529 1486 aa18.37■□□□□ 0.53
NOTCH3-206ENST00000601011 MYT1LQ9UL68 1186 aa18.36■□□□□ 0.53
NOTCH3-206ENST00000601011 TDRD9Q8NDG6 1382 aaKnown RBP18.33■□□□□ 0.53
NOTCH3-206ENST00000601011 SIN3AQ96ST3 1273 aa18.32■□□□□ 0.52
NOTCH3-206ENST00000601011 UNC13AQ9UPW8 1703 aa18.32■□□□□ 0.52
NOTCH3-206ENST00000601011 SYNJ1O43426 1573 aa18.32■□□□□ 0.52
NOTCH3-206ENST00000601011 KIF27Q86VH2 1401 aa18.32■□□□□ 0.52
NOTCH3-206ENST00000601011 EEA1Q15075 1411 aa18.31■□□□□ 0.52
NOTCH3-206ENST00000601011 SENP3-EIF4A1A0A087X0R7 540 aa18.28■□□□□ 0.52
NOTCH3-206ENST00000601011 MYT1Q01538 1121 aa18.25■□□□□ 0.51
NOTCH3-206ENST00000601011 RRP7BPQ9NSQ0 103 aa18.25■□□□□ 0.51
NOTCH3-206ENST00000601011 DDX10Q13206 875 aaKnown RBP18.24■□□□□ 0.51
NOTCH3-206ENST00000601011 CARMIL1Q5VZK9 1371 aa18.24■□□□□ 0.51
NOTCH3-206ENST00000601011 VPS8Q8N3P4 1428 aa18.21■□□□□ 0.51
NOTCH3-206ENST00000601011 NESP48681 1621 aa18.19■□□□□ 0.5
NOTCH3-206ENST00000601011 EIF4G1Q04637 1599 aaKnown RBP18.18■□□□□ 0.5
NOTCH3-206ENST00000601011 CADPSQ9ULU8 1353 aa18.16■□□□□ 0.5
NOTCH3-206ENST00000601011 RAD54L2Q9Y4B4 1467 aa18.16■□□□□ 0.5
NOTCH3-206ENST00000601011 ERICH6Q7L0X2 663 aa18.13■□□□□ 0.49
NOTCH3-206ENST00000601011 MTUS2Q5JR59 1369 aa18.1■□□□□ 0.49
NOTCH3-206ENST00000601011 SENP3Q9H4L4 574 aaPredicted RBP18.1■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms