RNA–Protein interactions for RNA: ENST00000597928.5

USHBP1-207, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 2

Gene USHBP1, Length 3,598 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-207ENST00000597928 NISCHQ9Y2I1 1504 aa23.62■■□□□ 1.37
USHBP1-207ENST00000597928 SHROOM4Q9ULL8 1493 aa22■■□□□ 1.11
USHBP1-207ENST00000597928 DCAF8L2P0C7V8 631 aa22■■□□□ 1.11
USHBP1-207ENST00000597928 SUPT5HO00267 1087 aaKnown RBP21.81■■□□□ 1.08
USHBP1-207ENST00000597928 EHMT2Q96KQ7 1210 aa20.86■□□□□ 0.93
USHBP1-207ENST00000597928 PCGF6Q9BYE7 350 aa20.61■□□□□ 0.89
USHBP1-207ENST00000597928 FAM9AQ8IZU1 332 aaPredicted RBP20.44■□□□□ 0.86
USHBP1-207ENST00000597928 LOC105371045A0A1W2PR82 267 aa20.37■□□□□ 0.85
USHBP1-207ENST00000597928 CHIC1Q5VXU3 224 aa20.36■□□□□ 0.85
USHBP1-207ENST00000597928 PPARGC1BQ86YN6 1023 aaKnown RBP20.21■□□□□ 0.83
USHBP1-207ENST00000597928 TTBK1Q5TCY1 1321 aaPredicted RBP20.09■□□□□ 0.81
USHBP1-207ENST00000597928 HRCP23327 699 aa19.97■□□□□ 0.79
USHBP1-207ENST00000597928 MYO15BQ96JP2 1530 aa19.92■□□□□ 0.78
USHBP1-207ENST00000597928 TRIM41Q8WV44 630 aa19.91■□□□□ 0.78
USHBP1-207ENST00000597928 ZCCHC6Q5VYS8 1495 aaKnown RBP19.79■□□□□ 0.76
USHBP1-207ENST00000597928 RANGAP1P46060 587 aaPredicted RBP19.6■□□□□ 0.73
USHBP1-207ENST00000597928 TRIM26Q12899 539 aaPredicted RBP19.55■□□□□ 0.72
USHBP1-207ENST00000597928 ABCC9O60706 1549 aa19.46■□□□□ 0.71
USHBP1-207ENST00000597928 CCER1Q8TC90 406 aaPredicted RBP19.36■□□□□ 0.69
USHBP1-207ENST00000597928 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.34■□□□□ 0.69
USHBP1-207ENST00000597928 SCRIBQ14160 1630 aa19.28■□□□□ 0.68
USHBP1-207ENST00000597928 UBTFP17480 764 aaKnown RBP19.27■□□□□ 0.67
USHBP1-207ENST00000597928 CCDC180Q9P1Z9 1646 aa19.25■□□□□ 0.67
USHBP1-207ENST00000597928 PABPN1Q86U42 306 aaKnown RBP eCLIP19.21■□□□□ 0.66
USHBP1-207ENST00000597928 YTHDC1Q96MU7 727 aaKnown RBP19.08■□□□□ 0.64
USHBP1-207ENST00000597928 ZEB1P37275 1124 aaPredicted RBP19.07■□□□□ 0.64
USHBP1-207ENST00000597928 RSF1Q96T23 1441 aaPredicted RBP19.04■□□□□ 0.64
USHBP1-207ENST00000597928 HNRNPUL2Q1KMD3 747 aaKnown RBP19.01■□□□□ 0.63
USHBP1-207ENST00000597928 DCAF1Q9Y4B6 1507 aa18.98■□□□□ 0.63
USHBP1-207ENST00000597928 APLP2Q06481 763 aa18.93■□□□□ 0.62
USHBP1-207ENST00000597928 CECR2Q9BXF3 1484 aa18.91■□□□□ 0.62
USHBP1-207ENST00000597928 ITGAEP38570 1179 aa18.8■□□□□ 0.6
USHBP1-207ENST00000597928 RB1CC1Q8TDY2 1594 aa18.8■□□□□ 0.6
USHBP1-207ENST00000597928 ATP1B4Q9UN42 357 aaPredicted RBP18.75■□□□□ 0.59
USHBP1-207ENST00000597928 DIEXFQ68CQ4 756 aaKnown RBP18.74■□□□□ 0.59
USHBP1-207ENST00000597928 SCAF1Q9H7N4 1312 aaKnown RBP18.66■□□□□ 0.58
USHBP1-207ENST00000597928 MROH2BQ7Z745 1585 aa18.62■□□□□ 0.57
USHBP1-207ENST00000597928 CSRNP3Q8WYN3 585 aa18.62■□□□□ 0.57
USHBP1-207ENST00000597928 CENPBP07199 599 aaPredicted RBP18.61■□□□□ 0.57
USHBP1-207ENST00000597928 GTF3C3Q9Y5Q9 886 aa18.58■□□□□ 0.57
USHBP1-207ENST00000597928 NEUROD1Q13562 356 aa18.55■□□□□ 0.56
USHBP1-207ENST00000597928 WIZO95785 1651 aa18.47■□□□□ 0.55
USHBP1-207ENST00000597928 SOGA1O94964 1423 aa18.47■□□□□ 0.55
USHBP1-207ENST00000597928 ABCC8Q09428 1581 aa18.47■□□□□ 0.55
USHBP1-207ENST00000597928 ACIN1Q9UKV3 1341 aaKnown RBP18.42■□□□□ 0.54
USHBP1-207ENST00000597928 CCDC88BA6NC98 1476 aa18.4■□□□□ 0.54
USHBP1-207ENST00000597928 CEP162Q5TB80 1403 aa18.35■□□□□ 0.53
USHBP1-207ENST00000597928 P3H3Q8IVL6 736 aa18.35■□□□□ 0.53
USHBP1-207ENST00000597928 ZNF316A6NFI3 1004 aaPredicted RBP18.35■□□□□ 0.53
USHBP1-207ENST00000597928 RUSC2Q8N2Y8 1516 aa18.31■□□□□ 0.52
USHBP1-207ENST00000597928 MIER1Q8N108 512 aa18.29■□□□□ 0.52
USHBP1-207ENST00000597928 NACADO15069 1562 aa18.24■□□□□ 0.51
USHBP1-207ENST00000597928 PELP1Q8IZL8 1130 aaKnown RBP18.22■□□□□ 0.51
USHBP1-207ENST00000597928 FAM50AQ14320 339 aaKnown RBP18.2■□□□□ 0.5
USHBP1-207ENST00000597928 CNGB1Q14028 1251 aaPredicted RBP18.19■□□□□ 0.5
USHBP1-207ENST00000597928 HIRIP3Q9BW71 556 aaPredicted RBP18.14■□□□□ 0.49
USHBP1-207ENST00000597928 BCANQ96GW7 911 aa18.13■□□□□ 0.49
USHBP1-207ENST00000597928 BAZ1AQ9NRL2 1556 aaPredicted RBP18.13■□□□□ 0.49
USHBP1-207ENST00000597928 WRNQ14191 1432 aaPredicted RBP eCLIP18.12■□□□□ 0.49
USHBP1-207ENST00000597928 CLIP1P30622 1438 aa18.11■□□□□ 0.49
USHBP1-207ENST00000597928 ARID3CA6NKF2 412 aa18.11■□□□□ 0.49
USHBP1-207ENST00000597928 TNIKQ9UKE5 1360 aa18.08■□□□□ 0.48
USHBP1-207ENST00000597928 KANK4Q5T7N3 995 aaPredicted RBP18.02■□□□□ 0.48
USHBP1-207ENST00000597928 GOLGA3Q08378 1498 aa17.99■□□□□ 0.47
USHBP1-207ENST00000597928 DDX10Q13206 875 aaKnown RBP17.91■□□□□ 0.46
USHBP1-207ENST00000597928 POLR3GLQ9BT43 218 aa17.89■□□□□ 0.45
USHBP1-207ENST00000597928 TOP2AP11388 1531 aaKnown RBP17.88■□□□□ 0.45
USHBP1-207ENST00000597928 BAZ1BQ9UIG0 1483 aaKnown RBP17.88■□□□□ 0.45
USHBP1-207ENST00000597928 RAPGEF2Q9Y4G8 1499 aa17.86■□□□□ 0.45
USHBP1-207ENST00000597928 SIN3AQ96ST3 1273 aa17.85■□□□□ 0.45
USHBP1-207ENST00000597928 SMARCA4P51532 1647 aa17.85■□□□□ 0.45
USHBP1-207ENST00000597928 SMARCA2P51531 1590 aa17.84■□□□□ 0.45
USHBP1-207ENST00000597928 CEP164Q9UPV0 1460 aa17.82■□□□□ 0.44
USHBP1-207ENST00000597928 KCNH8Q96L42 1107 aa17.79■□□□□ 0.44
USHBP1-207ENST00000597928 EEA1Q15075 1411 aa17.79■□□□□ 0.44
USHBP1-207ENST00000597928 TRIM52Q96A61 297 aa17.79■□□□□ 0.44
USHBP1-207ENST00000597928 CHIC2Q9UKJ5 165 aa17.76■□□□□ 0.43
USHBP1-207ENST00000597928 SENP3-EIF4A1A0A087X0R7 540 aa17.75■□□□□ 0.43
USHBP1-207ENST00000597928 NEFLP07196 543 aa17.73■□□□□ 0.43
USHBP1-207ENST00000597928 VPS8Q8N3P4 1428 aa17.72■□□□□ 0.43
USHBP1-207ENST00000597928 FKBP8Q14318 412 aa17.67■□□□□ 0.42
USHBP1-207ENST00000597928 ATAD2BQ9ULI0 1458 aa17.66■□□□□ 0.42
USHBP1-207ENST00000597928 IRX6P78412 446 aaPredicted RBP17.65■□□□□ 0.42
USHBP1-207ENST00000597928 ZNF326Q5BKZ1 582 aaKnown RBP17.65■□□□□ 0.42
USHBP1-207ENST00000597928 SYNJ1O43426 1573 aa17.62■□□□□ 0.41
USHBP1-207ENST00000597928 RRP7BPQ9NSQ0 103 aa17.6■□□□□ 0.41
USHBP1-207ENST00000597928 FBLN2P98095 1184 aa17.59■□□□□ 0.41
USHBP1-207ENST00000597928 KIF27Q86VH2 1401 aa17.58■□□□□ 0.4
USHBP1-207ENST00000597928 ANP32CO43423 234 aa17.58■□□□□ 0.4
USHBP1-207ENST00000597928 CUX2O14529 1486 aa17.56■□□□□ 0.4
USHBP1-207ENST00000597928 CCNB3Q8WWL7 1395 aa17.55■□□□□ 0.4
USHBP1-207ENST00000597928 DHX57Q6P158 1386 aaKnown RBP17.54■□□□□ 0.4
USHBP1-207ENST00000597928 SUPT16HQ9Y5B9 1047 aaKnown RBP17.53■□□□□ 0.4
USHBP1-207ENST00000597928 ZNF777Q9ULD5 760 aaPredicted RBP17.5■□□□□ 0.39
USHBP1-207ENST00000597928 RAB3GAP2Q9H2M9 1393 aa17.49■□□□□ 0.39
USHBP1-207ENST00000597928 CARMIL1Q5VZK9 1371 aa17.47■□□□□ 0.39
USHBP1-207ENST00000597928 FOXD1Q16676 465 aa17.47■□□□□ 0.39
USHBP1-207ENST00000597928 HNRNPUQ00839 825 aaKnown RBP eCLIP17.47■□□□□ 0.39
USHBP1-207ENST00000597928 TONSLQ96HA7 1378 aa17.46■□□□□ 0.39
USHBP1-207ENST00000597928 KIF21BO75037 1637 aa17.46■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms