RNA–Protein interactions for RNA: ENST00000583043.5

RTTN-209, Transcript of rotatin, humanhuman

TSL 1 (best)

Gene RTTN, Length 6,278 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTTN-209ENST00000583043 NISCHQ9Y2I1 1504 aa11.34□□□□□ -0.59
RTTN-209ENST00000583043 DCAF8L2P0C7V8 631 aa9.82□□□□□ -0.84
RTTN-209ENST00000583043 CCDC180Q9P1Z9 1646 aa9.71□□□□□ -0.86
RTTN-209ENST00000583043 SUPT5HO00267 1087 aaKnown RBP9.64□□□□□ -0.87
RTTN-209ENST00000583043 SHROOM4Q9ULL8 1493 aa9.6□□□□□ -0.87
RTTN-209ENST00000583043 ZCCHC6Q5VYS8 1495 aaKnown RBP9.54□□□□□ -0.88
RTTN-209ENST00000583043 DCAF1Q9Y4B6 1507 aa9.44□□□□□ -0.9
RTTN-209ENST00000583043 MYO15BQ96JP2 1530 aa9.26□□□□□ -0.93
RTTN-209ENST00000583043 ZEB1P37275 1124 aaPredicted RBP9.23□□□□□ -0.93
RTTN-209ENST00000583043 CHIC1Q5VXU3 224 aa9.2□□□□□ -0.94
RTTN-209ENST00000583043 TRIM41Q8WV44 630 aa9.19□□□□□ -0.94
RTTN-209ENST00000583043 NACADO15069 1562 aa9.16□□□□□ -0.94
RTTN-209ENST00000583043 APLP2Q06481 763 aa9.05□□□□□ -0.96
RTTN-209ENST00000583043 RB1CC1Q8TDY2 1594 aa9.05□□□□□ -0.96
RTTN-209ENST00000583043 TRIM26Q12899 539 aaPredicted RBP9.03□□□□□ -0.96
RTTN-209ENST00000583043 ABCC9O60706 1549 aa9.03□□□□□ -0.96
RTTN-209ENST00000583043 PCGF6Q9BYE7 350 aa8.97□□□□□ -0.97
RTTN-209ENST00000583043 HRCP23327 699 aa8.96□□□□□ -0.98
RTTN-209ENST00000583043 SCRIBQ14160 1630 aa8.95□□□□□ -0.98
RTTN-209ENST00000583043 RSF1Q96T23 1441 aaPredicted RBP8.92□□□□□ -0.98
RTTN-209ENST00000583043 FAM9AQ8IZU1 332 aaPredicted RBP8.9□□□□□ -0.98
RTTN-209ENST00000583043 EEA1Q15075 1411 aa8.89□□□□□ -0.99
RTTN-209ENST00000583043 BAZ1AQ9NRL2 1556 aaPredicted RBP8.89□□□□□ -0.99
RTTN-209ENST00000583043 UBTFP17480 764 aaKnown RBP8.84□□□□□ -0.99
RTTN-209ENST00000583043 PELP1Q8IZL8 1130 aaKnown RBP8.81□□□□□ -1
RTTN-209ENST00000583043 CENPBP07199 599 aaPredicted RBP8.77□□□□□ -1.01
RTTN-209ENST00000583043 CCER1Q8TC90 406 aaPredicted RBP8.77□□□□□ -1.01
RTTN-209ENST00000583043 LOC105371045A0A1W2PR82 267 aa8.75□□□□□ -1.01
RTTN-209ENST00000583043 CSRNP3Q8WYN3 585 aa8.74□□□□□ -1.01
RTTN-209ENST00000583043 TOP2AP11388 1531 aaKnown RBP8.68□□□□□ -1.02
RTTN-209ENST00000583043 EHMT2Q96KQ7 1210 aa8.67□□□□□ -1.02
RTTN-209ENST00000583043 SMARCA2P51531 1590 aa8.66□□□□□ -1.02
RTTN-209ENST00000583043 TNIKQ9UKE5 1360 aa8.64□□□□□ -1.03
RTTN-209ENST00000583043 PABPN1Q86U42 306 aaKnown RBP eCLIP8.64□□□□□ -1.03
RTTN-209ENST00000583043 MROH2BQ7Z745 1585 aa8.64□□□□□ -1.03
RTTN-209ENST00000583043 GOLGA3Q08378 1498 aa8.64□□□□□ -1.03
RTTN-209ENST00000583043 CECR2Q9BXF3 1484 aa8.63□□□□□ -1.03
RTTN-209ENST00000583043 BAZ1BQ9UIG0 1483 aaKnown RBP8.63□□□□□ -1.03
RTTN-209ENST00000583043 WRNQ14191 1432 aaPredicted RBP eCLIP8.62□□□□□ -1.03
RTTN-209ENST00000583043 CEP164Q9UPV0 1460 aa8.61□□□□□ -1.03
RTTN-209ENST00000583043 ACIN1Q9UKV3 1341 aaKnown RBP8.59□□□□□ -1.03
RTTN-209ENST00000583043 SMARCA4P51532 1647 aa8.58□□□□□ -1.04
RTTN-209ENST00000583043 CCDC88BA6NC98 1476 aa8.54□□□□□ -1.04
RTTN-209ENST00000583043 MYT1Q01538 1121 aa8.53□□□□□ -1.04
RTTN-209ENST00000583043 CEP162Q5TB80 1403 aa8.52□□□□□ -1.05
RTTN-209ENST00000583043 KIF27Q86VH2 1401 aa8.52□□□□□ -1.05
RTTN-209ENST00000583043 CLIP1P30622 1438 aa8.51□□□□□ -1.05
RTTN-209ENST00000583043 CLSPNQ9HAW4 1339 aa8.51□□□□□ -1.05
RTTN-209ENST00000583043 WIZO95785 1651 aa8.48□□□□□ -1.05
RTTN-209ENST00000583043 ATAD2BQ9ULI0 1458 aa8.47□□□□□ -1.05
RTTN-209ENST00000583043 TTBK1Q5TCY1 1321 aaPredicted RBP8.44□□□□□ -1.06
RTTN-209ENST00000583043 DIEXFQ68CQ4 756 aaKnown RBP8.43□□□□□ -1.06
RTTN-209ENST00000583043 ZNF316A6NFI3 1004 aaPredicted RBP8.43□□□□□ -1.06
RTTN-209ENST00000583043 RANGAP1P46060 587 aaPredicted RBP8.43□□□□□ -1.06
RTTN-209ENST00000583043 NCAPD3P42695 1498 aa8.42□□□□□ -1.06
RTTN-209ENST00000583043 HNRNPUL2Q1KMD3 747 aaKnown RBP8.42□□□□□ -1.06
RTTN-209ENST00000583043 ATP1B4Q9UN42 357 aaPredicted RBP8.42□□□□□ -1.06
RTTN-209ENST00000583043 PEG3Q9GZU2 1588 aa8.42□□□□□ -1.06
RTTN-209ENST00000583043 VPS8Q8N3P4 1428 aa8.41□□□□□ -1.06
RTTN-209ENST00000583043 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.41□□□□□ -1.06
RTTN-209ENST00000583043 FHAD1B1AJZ9 1412 aa8.4□□□□□ -1.06
RTTN-209ENST00000583043 HMGXB3Q12766 1538 aa8.39□□□□□ -1.07
RTTN-209ENST00000583043 PPARGC1BQ86YN6 1023 aaKnown RBP8.39□□□□□ -1.07
RTTN-209ENST00000583043 ABCC8Q09428 1581 aa8.39□□□□□ -1.07
RTTN-209ENST00000583043 NEFLP07196 543 aa8.38□□□□□ -1.07
RTTN-209ENST00000583043 CDK11AQ9UQ88 783 aaPredicted RBP8.37□□□□□ -1.07
RTTN-209ENST00000583043 TIMELESSQ9UNS1 1208 aa8.36□□□□□ -1.07
RTTN-209ENST00000583043 SOGA1O94964 1423 aa8.35□□□□□ -1.07
RTTN-209ENST00000583043 KIF21BO75037 1637 aa8.34□□□□□ -1.07
RTTN-209ENST00000583043 CADPSQ9ULU8 1353 aa8.34□□□□□ -1.07
RTTN-209ENST00000583043 ERICH3Q5RHP9 1530 aa8.33□□□□□ -1.08
RTTN-209ENST00000583043 PDS5BQ9NTI5 1447 aa8.3□□□□□ -1.08
RTTN-209ENST00000583043 FAM50AQ14320 339 aaKnown RBP8.3□□□□□ -1.08
RTTN-209ENST00000583043 CARMIL1Q5VZK9 1371 aa8.3□□□□□ -1.08
RTTN-209ENST00000583043 CUX2O14529 1486 aa8.27□□□□□ -1.08
RTTN-209ENST00000583043 RAPGEF2Q9Y4G8 1499 aa8.27□□□□□ -1.08
RTTN-209ENST00000583043 CFTRP13569 1480 aa8.27□□□□□ -1.09
RTTN-209ENST00000583043 FMN1Q68DA7 1419 aa8.26□□□□□ -1.09
RTTN-209ENST00000583043 BICRAQ9NZM4 1560 aa8.26□□□□□ -1.09
RTTN-209ENST00000583043 ITGAEP38570 1179 aa8.25□□□□□ -1.09
RTTN-209ENST00000583043 MTUS2Q5JR59 1369 aa8.25□□□□□ -1.09
RTTN-209ENST00000583043 EIF4G1Q04637 1599 aaKnown RBP8.25□□□□□ -1.09
RTTN-209ENST00000583043 TOP2BQ02880 1626 aa8.25□□□□□ -1.09
RTTN-209ENST00000583043 CCNB3Q8WWL7 1395 aa8.25□□□□□ -1.09
RTTN-209ENST00000583043 ANP32CO43423 234 aa8.22□□□□□ -1.09
RTTN-209ENST00000583043 TONSLQ96HA7 1378 aa8.21□□□□□ -1.1
RTTN-209ENST00000583043 PRXQ9BXM0 1461 aa8.2□□□□□ -1.1
RTTN-209ENST00000583043 YTHDC1Q96MU7 727 aaKnown RBP8.18□□□□□ -1.1
RTTN-209ENST00000583043 ARHGAP35Q9NRY4 1499 aa8.18□□□□□ -1.1
RTTN-209ENST00000583043 TRIM52Q96A61 297 aa8.17□□□□□ -1.1
RTTN-209ENST00000583043 FANCD2Q9BXW9 1451 aa8.17□□□□□ -1.1
RTTN-209ENST00000583043 MAP3K1Q13233 1512 aa8.17□□□□□ -1.1
RTTN-209ENST00000583043 EFCAB5A4FU69 1503 aa8.17□□□□□ -1.1
RTTN-209ENST00000583043 SETD5Q9C0A6 1442 aa8.16□□□□□ -1.1
RTTN-209ENST00000583043 SYNJ1O43426 1573 aa8.16□□□□□ -1.1
RTTN-209ENST00000583043 IGF1RP08069 1367 aa8.14□□□□□ -1.11
RTTN-209ENST00000583043 BIVM-ERCC5R4GMW8 1640 aa8.14□□□□□ -1.11
RTTN-209ENST00000583043 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP8.13□□□□□ -1.11
RTTN-209ENST00000583043 FGD5Q6ZNL6 1462 aa8.12□□□□□ -1.11
RTTN-209ENST00000583043 ERICH6Q7L0X2 663 aa8.12□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms