RNA–Protein interactions for RNA: ENST00000578998.1

RBFOX3-202, Transcript of RNA binding fox-1 homolog 3, humanhuman

TSL 2

Gene RBFOX3, Length 3,072 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RBFOX3-202ENST00000578998 NISCHQ9Y2I1 1504 aa26.5■■□□□ 1.83
RBFOX3-202ENST00000578998 SHROOM4Q9ULL8 1493 aa23.34■■□□□ 1.33
RBFOX3-202ENST00000578998 SUPT5HO00267 1087 aaKnown RBP22.97■■□□□ 1.27
RBFOX3-202ENST00000578998 DCAF8L2P0C7V8 631 aa22.74■■□□□ 1.23
RBFOX3-202ENST00000578998 ZCCHC6Q5VYS8 1495 aaKnown RBP22.37■■□□□ 1.17
RBFOX3-202ENST00000578998 CCDC180Q9P1Z9 1646 aa22.17■■□□□ 1.14
RBFOX3-202ENST00000578998 CHIC1Q5VXU3 224 aa22.1■■□□□ 1.13
RBFOX3-202ENST00000578998 MYO15BQ96JP2 1530 aa22■■□□□ 1.11
RBFOX3-202ENST00000578998 PCGF6Q9BYE7 350 aa21.8■■□□□ 1.08
RBFOX3-202ENST00000578998 LOC105371045A0A1W2PR82 267 aa21.69■■□□□ 1.06
RBFOX3-202ENST00000578998 HRCP23327 699 aa21.63■■□□□ 1.05
RBFOX3-202ENST00000578998 PPARGC1BQ86YN6 1023 aaKnown RBP21.48■■□□□ 1.03
RBFOX3-202ENST00000578998 DCAF1Q9Y4B6 1507 aa21.44■■□□□ 1.02
RBFOX3-202ENST00000578998 EHMT2Q96KQ7 1210 aa21.38■■□□□ 1.01
RBFOX3-202ENST00000578998 FAM9AQ8IZU1 332 aaPredicted RBP21.33■■□□□ 1
RBFOX3-202ENST00000578998 SCRIBQ14160 1630 aa21.28■■□□□ 1
RBFOX3-202ENST00000578998 TRIM41Q8WV44 630 aa21.2■□□□□ 0.99
RBFOX3-202ENST00000578998 RSF1Q96T23 1441 aaPredicted RBP21.14■□□□□ 0.97
RBFOX3-202ENST00000578998 ABCC9O60706 1549 aa21.11■□□□□ 0.97
RBFOX3-202ENST00000578998 TRIM26Q12899 539 aaPredicted RBP21.08■□□□□ 0.97
RBFOX3-202ENST00000578998 RB1CC1Q8TDY2 1594 aa20.96■□□□□ 0.95
RBFOX3-202ENST00000578998 CECR2Q9BXF3 1484 aa20.88■□□□□ 0.93
RBFOX3-202ENST00000578998 MROH2BQ7Z745 1585 aa20.73■□□□□ 0.91
RBFOX3-202ENST00000578998 TTBK1Q5TCY1 1321 aaPredicted RBP20.68■□□□□ 0.9
RBFOX3-202ENST00000578998 WIZO95785 1651 aa20.62■□□□□ 0.89
RBFOX3-202ENST00000578998 NACADO15069 1562 aa20.61■□□□□ 0.89
RBFOX3-202ENST00000578998 ZEB1P37275 1124 aaPredicted RBP20.57■□□□□ 0.88
RBFOX3-202ENST00000578998 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.48■□□□□ 0.87
RBFOX3-202ENST00000578998 CCER1Q8TC90 406 aaPredicted RBP20.39■□□□□ 0.85
RBFOX3-202ENST00000578998 PABPN1Q86U42 306 aaKnown RBP eCLIP20.38■□□□□ 0.85
RBFOX3-202ENST00000578998 ABCC8Q09428 1581 aa20.34■□□□□ 0.85
RBFOX3-202ENST00000578998 BAZ1AQ9NRL2 1556 aaPredicted RBP20.3■□□□□ 0.84
RBFOX3-202ENST00000578998 UBTFP17480 764 aaKnown RBP20.28■□□□□ 0.84
RBFOX3-202ENST00000578998 CCDC88BA6NC98 1476 aa20.27■□□□□ 0.84
RBFOX3-202ENST00000578998 SOGA1O94964 1423 aa20.21■□□□□ 0.83
RBFOX3-202ENST00000578998 RANGAP1P46060 587 aaPredicted RBP20.16■□□□□ 0.82
RBFOX3-202ENST00000578998 TOP2AP11388 1531 aaKnown RBP20.14■□□□□ 0.81
RBFOX3-202ENST00000578998 SMARCA4P51532 1647 aa20.12■□□□□ 0.81
RBFOX3-202ENST00000578998 SCAF1Q9H7N4 1312 aaKnown RBP20.12■□□□□ 0.81
RBFOX3-202ENST00000578998 CSRNP3Q8WYN3 585 aa20.11■□□□□ 0.81
RBFOX3-202ENST00000578998 RUSC2Q8N2Y8 1516 aa20.11■□□□□ 0.81
RBFOX3-202ENST00000578998 EIF4G1Q04637 1599 aaKnown RBP20.11■□□□□ 0.81
RBFOX3-202ENST00000578998 CEP162Q5TB80 1403 aa20.11■□□□□ 0.81
RBFOX3-202ENST00000578998 SMARCA2P51531 1590 aa20.08■□□□□ 0.81
RBFOX3-202ENST00000578998 HNRNPUL2Q1KMD3 747 aaKnown RBP19.99■□□□□ 0.79
RBFOX3-202ENST00000578998 UNC13AQ9UPW8 1703 aa19.98■□□□□ 0.79
RBFOX3-202ENST00000578998 DIEXFQ68CQ4 756 aaKnown RBP19.97■□□□□ 0.79
RBFOX3-202ENST00000578998 TNIKQ9UKE5 1360 aa19.96■□□□□ 0.79
RBFOX3-202ENST00000578998 WRNQ14191 1432 aaPredicted RBP eCLIP19.9■□□□□ 0.78
RBFOX3-202ENST00000578998 NEUROD1Q13562 356 aa19.89■□□□□ 0.77
RBFOX3-202ENST00000578998 GOLGA3Q08378 1498 aa19.83■□□□□ 0.77
RBFOX3-202ENST00000578998 ACIN1Q9UKV3 1341 aaKnown RBP19.82■□□□□ 0.76
RBFOX3-202ENST00000578998 APLP2Q06481 763 aa19.81■□□□□ 0.76
RBFOX3-202ENST00000578998 EEA1Q15075 1411 aa19.8■□□□□ 0.76
RBFOX3-202ENST00000578998 YTHDC1Q96MU7 727 aaKnown RBP19.8■□□□□ 0.76
RBFOX3-202ENST00000578998 BICRAQ9NZM4 1560 aa19.78■□□□□ 0.76
RBFOX3-202ENST00000578998 GTF3C3Q9Y5Q9 886 aa19.74■□□□□ 0.75
RBFOX3-202ENST00000578998 CLIP1P30622 1438 aa19.73■□□□□ 0.75
RBFOX3-202ENST00000578998 SYNJ1O43426 1573 aa19.72■□□□□ 0.75
RBFOX3-202ENST00000578998 ZNF316A6NFI3 1004 aaPredicted RBP19.71■□□□□ 0.75
RBFOX3-202ENST00000578998 CENPBP07199 599 aaPredicted RBP19.71■□□□□ 0.75
RBFOX3-202ENST00000578998 BAZ1BQ9UIG0 1483 aaKnown RBP19.68■□□□□ 0.74
RBFOX3-202ENST00000578998 CEP164Q9UPV0 1460 aa19.68■□□□□ 0.74
RBFOX3-202ENST00000578998 ATAD2BQ9ULI0 1458 aa19.67■□□□□ 0.74
RBFOX3-202ENST00000578998 RAPGEF2Q9Y4G8 1499 aa19.64■□□□□ 0.74
RBFOX3-202ENST00000578998 PELP1Q8IZL8 1130 aaKnown RBP19.56■□□□□ 0.72
RBFOX3-202ENST00000578998 MIER1Q8N108 512 aa19.56■□□□□ 0.72
RBFOX3-202ENST00000578998 VPS8Q8N3P4 1428 aa19.55■□□□□ 0.72
RBFOX3-202ENST00000578998 ITGAEP38570 1179 aa19.52■□□□□ 0.71
RBFOX3-202ENST00000578998 PEG3Q9GZU2 1588 aa19.52■□□□□ 0.71
RBFOX3-202ENST00000578998 KIF21BO75037 1637 aa19.49■□□□□ 0.71
RBFOX3-202ENST00000578998 KANK4Q5T7N3 995 aaPredicted RBP19.47■□□□□ 0.71
RBFOX3-202ENST00000578998 TOP2BQ02880 1626 aa19.34■□□□□ 0.69
RBFOX3-202ENST00000578998 ATP1B4Q9UN42 357 aaPredicted RBP19.31■□□□□ 0.68
RBFOX3-202ENST00000578998 ARAP1Q96P48 1450 aa19.28■□□□□ 0.68
RBFOX3-202ENST00000578998 P3H3Q8IVL6 736 aa19.26■□□□□ 0.67
RBFOX3-202ENST00000578998 PRXQ9BXM0 1461 aa19.25■□□□□ 0.67
RBFOX3-202ENST00000578998 CUX1P39880 1505 aa19.25■□□□□ 0.67
RBFOX3-202ENST00000578998 KIF27Q86VH2 1401 aa19.25■□□□□ 0.67
RBFOX3-202ENST00000578998 DHX57Q6P158 1386 aaKnown RBP19.25■□□□□ 0.67
RBFOX3-202ENST00000578998 BIVM-ERCC5R4GMW8 1640 aa19.17■□□□□ 0.66
RBFOX3-202ENST00000578998 NCAPD3P42695 1498 aa19.16■□□□□ 0.66
RBFOX3-202ENST00000578998 ERICH3Q5RHP9 1530 aa19.15■□□□□ 0.66
RBFOX3-202ENST00000578998 FAM50AQ14320 339 aaKnown RBP19.15■□□□□ 0.66
RBFOX3-202ENST00000578998 CUX2O14529 1486 aa19.14■□□□□ 0.65
RBFOX3-202ENST00000578998 CCNB3Q8WWL7 1395 aa19.12■□□□□ 0.65
RBFOX3-202ENST00000578998 ARHGAP35Q9NRY4 1499 aa19.11■□□□□ 0.65
RBFOX3-202ENST00000578998 CFTRP13569 1480 aa19.08■□□□□ 0.65
RBFOX3-202ENST00000578998 IGF1RP08069 1367 aa19.06■□□□□ 0.64
RBFOX3-202ENST00000578998 HMGXB3Q12766 1538 aa19.06■□□□□ 0.64
RBFOX3-202ENST00000578998 CLSPNQ9HAW4 1339 aa19.05■□□□□ 0.64
RBFOX3-202ENST00000578998 RRBP1Q9P2E9 1410 aaKnown RBP19.04■□□□□ 0.64
RBFOX3-202ENST00000578998 CARMIL1Q5VZK9 1371 aa19.03■□□□□ 0.64
RBFOX3-202ENST00000578998 SIN3AQ96ST3 1273 aa19.03■□□□□ 0.64
RBFOX3-202ENST00000578998 RAB3GAP2Q9H2M9 1393 aa19.02■□□□□ 0.64
RBFOX3-202ENST00000578998 HIRIP3Q9BW71 556 aaPredicted RBP19.02■□□□□ 0.63
RBFOX3-202ENST00000578998 KCNH8Q96L42 1107 aa19.01■□□□□ 0.63
RBFOX3-202ENST00000578998 CADPSQ9ULU8 1353 aa18.95■□□□□ 0.62
RBFOX3-202ENST00000578998 FGD5Q6ZNL6 1462 aa18.95■□□□□ 0.62
RBFOX3-202ENST00000578998 DDX10Q13206 875 aaKnown RBP18.94■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms