RNA–Protein interactions for RNA: ENST00000578172.1

NDEL1-204, Transcript of nudE neurodevelopment protein 1 like 1, humanhuman

Gene NDEL1, Length 3,927 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NDEL1-204ENST00000578172 NISCHQ9Y2I1 1504 aa26.38■■□□□ 1.81
NDEL1-204ENST00000578172 SHROOM4Q9ULL8 1493 aa24.29■■□□□ 1.48
NDEL1-204ENST00000578172 DCAF8L2P0C7V8 631 aa24.1■■□□□ 1.45
NDEL1-204ENST00000578172 SUPT5HO00267 1087 aaKnown RBP24.01■■□□□ 1.43
NDEL1-204ENST00000578172 EHMT2Q96KQ7 1210 aa22.86■■□□□ 1.25
NDEL1-204ENST00000578172 PCGF6Q9BYE7 350 aa22.72■■□□□ 1.23
NDEL1-204ENST00000578172 CHIC1Q5VXU3 224 aa22.56■■□□□ 1.2
NDEL1-204ENST00000578172 LOC105371045A0A1W2PR82 267 aa22.5■■□□□ 1.19
NDEL1-204ENST00000578172 FAM9AQ8IZU1 332 aaPredicted RBP22.47■■□□□ 1.19
NDEL1-204ENST00000578172 PPARGC1BQ86YN6 1023 aaKnown RBP22.34■■□□□ 1.17
NDEL1-204ENST00000578172 MYO15BQ96JP2 1530 aa22.23■■□□□ 1.15
NDEL1-204ENST00000578172 ZCCHC6Q5VYS8 1495 aaKnown RBP22.15■■□□□ 1.14
NDEL1-204ENST00000578172 HRCP23327 699 aa22.12■■□□□ 1.13
NDEL1-204ENST00000578172 TTBK1Q5TCY1 1321 aaPredicted RBP22.03■■□□□ 1.12
NDEL1-204ENST00000578172 TRIM41Q8WV44 630 aa21.95■■□□□ 1.1
NDEL1-204ENST00000578172 CCDC180Q9P1Z9 1646 aa21.63■■□□□ 1.05
NDEL1-204ENST00000578172 TRIM26Q12899 539 aaPredicted RBP21.61■■□□□ 1.05
NDEL1-204ENST00000578172 ABCC9O60706 1549 aa21.57■■□□□ 1.04
NDEL1-204ENST00000578172 SCRIBQ14160 1630 aa21.48■■□□□ 1.03
NDEL1-204ENST00000578172 RANGAP1P46060 587 aaPredicted RBP21.47■■□□□ 1.03
NDEL1-204ENST00000578172 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.33■■□□□ 1
NDEL1-204ENST00000578172 CCER1Q8TC90 406 aaPredicted RBP21.28■■□□□ 1
NDEL1-204ENST00000578172 RSF1Q96T23 1441 aaPredicted RBP21.22■□□□□ 0.99
NDEL1-204ENST00000578172 UBTFP17480 764 aaKnown RBP21.18■□□□□ 0.98
NDEL1-204ENST00000578172 PABPN1Q86U42 306 aaKnown RBP eCLIP21.18■□□□□ 0.98
NDEL1-204ENST00000578172 DCAF1Q9Y4B6 1507 aa21.16■□□□□ 0.98
NDEL1-204ENST00000578172 CECR2Q9BXF3 1484 aa21.07■□□□□ 0.96
NDEL1-204ENST00000578172 ZEB1P37275 1124 aaPredicted RBP21.04■□□□□ 0.96
NDEL1-204ENST00000578172 RB1CC1Q8TDY2 1594 aa21.01■□□□□ 0.95
NDEL1-204ENST00000578172 YTHDC1Q96MU7 727 aaKnown RBP20.94■□□□□ 0.94
NDEL1-204ENST00000578172 HNRNPUL2Q1KMD3 747 aaKnown RBP20.92■□□□□ 0.94
NDEL1-204ENST00000578172 MROH2BQ7Z745 1585 aa20.78■□□□□ 0.92
NDEL1-204ENST00000578172 PELP1Q8IZL8 1130 aaKnown RBP20.76■□□□□ 0.91
NDEL1-204ENST00000578172 APLP2Q06481 763 aa20.74■□□□□ 0.91
NDEL1-204ENST00000578172 SCAF1Q9H7N4 1312 aaKnown RBP20.68■□□□□ 0.9
NDEL1-204ENST00000578172 DIEXFQ68CQ4 756 aaKnown RBP20.67■□□□□ 0.9
NDEL1-204ENST00000578172 WIZO95785 1651 aa20.64■□□□□ 0.89
NDEL1-204ENST00000578172 ITGAEP38570 1179 aa20.62■□□□□ 0.89
NDEL1-204ENST00000578172 CSRNP3Q8WYN3 585 aa20.59■□□□□ 0.89
NDEL1-204ENST00000578172 ABCC8Q09428 1581 aa20.57■□□□□ 0.88
NDEL1-204ENST00000578172 NEUROD1Q13562 356 aa20.52■□□□□ 0.88
NDEL1-204ENST00000578172 SOGA1O94964 1423 aa20.52■□□□□ 0.88
NDEL1-204ENST00000578172 ATP1B4Q9UN42 357 aaPredicted RBP20.51■□□□□ 0.87
NDEL1-204ENST00000578172 GTF3C3Q9Y5Q9 886 aa20.49■□□□□ 0.87
NDEL1-204ENST00000578172 CCDC88BA6NC98 1476 aa20.48■□□□□ 0.87
NDEL1-204ENST00000578172 CENPBP07199 599 aaPredicted RBP20.47■□□□□ 0.87
NDEL1-204ENST00000578172 CEP162Q5TB80 1403 aa20.39■□□□□ 0.85
NDEL1-204ENST00000578172 RUSC2Q8N2Y8 1516 aa20.39■□□□□ 0.85
NDEL1-204ENST00000578172 NACADO15069 1562 aa20.39■□□□□ 0.85
NDEL1-204ENST00000578172 ACIN1Q9UKV3 1341 aaKnown RBP20.36■□□□□ 0.85
NDEL1-204ENST00000578172 ZNF316A6NFI3 1004 aaPredicted RBP20.26■□□□□ 0.83
NDEL1-204ENST00000578172 BAZ1AQ9NRL2 1556 aaPredicted RBP20.22■□□□□ 0.83
NDEL1-204ENST00000578172 MIER1Q8N108 512 aa20.2■□□□□ 0.82
NDEL1-204ENST00000578172 P3H3Q8IVL6 736 aa20.18■□□□□ 0.82
NDEL1-204ENST00000578172 WRNQ14191 1432 aaPredicted RBP eCLIP20.13■□□□□ 0.81
NDEL1-204ENST00000578172 TNIKQ9UKE5 1360 aa20.1■□□□□ 0.81
NDEL1-204ENST00000578172 CLIP1P30622 1438 aa20.08■□□□□ 0.81
NDEL1-204ENST00000578172 FAM50AQ14320 339 aaKnown RBP20.02■□□□□ 0.79
NDEL1-204ENST00000578172 GOLGA3Q08378 1498 aa20.01■□□□□ 0.79
NDEL1-204ENST00000578172 TOP2AP11388 1531 aaKnown RBP19.99■□□□□ 0.79
NDEL1-204ENST00000578172 MYT1Q01538 1121 aa19.98■□□□□ 0.79
NDEL1-204ENST00000578172 SMARCA4P51532 1647 aa19.97■□□□□ 0.79
NDEL1-204ENST00000578172 HIRIP3Q9BW71 556 aaPredicted RBP19.96■□□□□ 0.79
NDEL1-204ENST00000578172 SMARCA2P51531 1590 aa19.96■□□□□ 0.79
NDEL1-204ENST00000578172 KANK4Q5T7N3 995 aaPredicted RBP19.96■□□□□ 0.79
NDEL1-204ENST00000578172 BCANQ96GW7 911 aa19.92■□□□□ 0.78
NDEL1-204ENST00000578172 CNGB1Q14028 1251 aaPredicted RBP19.88■□□□□ 0.77
NDEL1-204ENST00000578172 BAZ1BQ9UIG0 1483 aaKnown RBP19.87■□□□□ 0.77
NDEL1-204ENST00000578172 RAPGEF2Q9Y4G8 1499 aa19.87■□□□□ 0.77
NDEL1-204ENST00000578172 ARID3CA6NKF2 412 aa19.87■□□□□ 0.77
NDEL1-204ENST00000578172 CEP164Q9UPV0 1460 aa19.81■□□□□ 0.76
NDEL1-204ENST00000578172 EEA1Q15075 1411 aa19.79■□□□□ 0.76
NDEL1-204ENST00000578172 DDX10Q13206 875 aaKnown RBP19.72■□□□□ 0.75
NDEL1-204ENST00000578172 VPS8Q8N3P4 1428 aa19.71■□□□□ 0.75
NDEL1-204ENST00000578172 SIN3AQ96ST3 1273 aa19.71■□□□□ 0.75
NDEL1-204ENST00000578172 SYNJ1O43426 1573 aa19.7■□□□□ 0.74
NDEL1-204ENST00000578172 ATAD2BQ9ULI0 1458 aa19.69■□□□□ 0.74
NDEL1-204ENST00000578172 KCNH8Q96L42 1107 aa19.69■□□□□ 0.74
NDEL1-204ENST00000578172 EIF4G1Q04637 1599 aaKnown RBP19.61■□□□□ 0.73
NDEL1-204ENST00000578172 TRIM52Q96A61 297 aa19.58■□□□□ 0.73
NDEL1-204ENST00000578172 POLR3GLQ9BT43 218 aa19.56■□□□□ 0.72
NDEL1-204ENST00000578172 UNC13AQ9UPW8 1703 aa19.56■□□□□ 0.72
NDEL1-204ENST00000578172 CHIC2Q9UKJ5 165 aa19.54■□□□□ 0.72
NDEL1-204ENST00000578172 BICRAQ9NZM4 1560 aa19.52■□□□□ 0.71
NDEL1-204ENST00000578172 KIF27Q86VH2 1401 aa19.5■□□□□ 0.71
NDEL1-204ENST00000578172 DHX57Q6P158 1386 aaKnown RBP19.5■□□□□ 0.71
NDEL1-204ENST00000578172 SENP3-EIF4A1A0A087X0R7 540 aa19.49■□□□□ 0.71
NDEL1-204ENST00000578172 KIF21BO75037 1637 aa19.48■□□□□ 0.71
NDEL1-204ENST00000578172 CUX2O14529 1486 aa19.47■□□□□ 0.71
NDEL1-204ENST00000578172 CCNB3Q8WWL7 1395 aa19.46■□□□□ 0.71
NDEL1-204ENST00000578172 FKBP8Q14318 412 aa19.45■□□□□ 0.7
NDEL1-204ENST00000578172 NEFLP07196 543 aa19.43■□□□□ 0.7
NDEL1-204ENST00000578172 IRX6P78412 446 aaPredicted RBP19.42■□□□□ 0.7
NDEL1-204ENST00000578172 ARAP1Q96P48 1450 aa19.41■□□□□ 0.7
NDEL1-204ENST00000578172 ERICH6Q7L0X2 663 aa19.41■□□□□ 0.7
NDEL1-204ENST00000578172 RAB3GAP2Q9H2M9 1393 aa19.4■□□□□ 0.7
NDEL1-204ENST00000578172 SUPT16HQ9Y5B9 1047 aaKnown RBP19.4■□□□□ 0.7
NDEL1-204ENST00000578172 RRP7BPQ9NSQ0 103 aa19.39■□□□□ 0.69
NDEL1-204ENST00000578172 CARMIL1Q5VZK9 1371 aa19.37■□□□□ 0.69
NDEL1-204ENST00000578172 ZNF326Q5BKZ1 582 aaKnown RBP19.35■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms