RNA–Protein interactions for RNA: ENST00000575112.5

RPAIN-215, Transcript of RPA interacting protein, humanhuman

TSL 2

Gene RPAIN, Length 3,817 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPAIN-215ENST00000575112 NISCHQ9Y2I1 1504 aa16.19■□□□□ 0.18
RPAIN-215ENST00000575112 DCAF8L2P0C7V8 631 aa15.3■□□□□ 0.04
RPAIN-215ENST00000575112 SHROOM4Q9ULL8 1493 aa15.16■□□□□ 0.02
RPAIN-215ENST00000575112 SUPT5HO00267 1087 aaKnown RBP15.01□□□□□ -0.01
RPAIN-215ENST00000575112 EHMT2Q96KQ7 1210 aa14.43□□□□□ -0.1
RPAIN-215ENST00000575112 PPARGC1BQ86YN6 1023 aaKnown RBP14.29□□□□□ -0.12
RPAIN-215ENST00000575112 MYO15BQ96JP2 1530 aa14.25□□□□□ -0.13
RPAIN-215ENST00000575112 HRCP23327 699 aa14.23□□□□□ -0.13
RPAIN-215ENST00000575112 PCGF6Q9BYE7 350 aa14.21□□□□□ -0.13
RPAIN-215ENST00000575112 FAM9AQ8IZU1 332 aaPredicted RBP14.09□□□□□ -0.15
RPAIN-215ENST00000575112 CHIC1Q5VXU3 224 aa14.07□□□□□ -0.16
RPAIN-215ENST00000575112 LOC105371045A0A1W2PR82 267 aa13.97□□□□□ -0.17
RPAIN-215ENST00000575112 TTBK1Q5TCY1 1321 aaPredicted RBP13.86□□□□□ -0.19
RPAIN-215ENST00000575112 ZCCHC6Q5VYS8 1495 aaKnown RBP13.72□□□□□ -0.21
RPAIN-215ENST00000575112 TRIM41Q8WV44 630 aa13.66□□□□□ -0.22
RPAIN-215ENST00000575112 RANGAP1P46060 587 aaPredicted RBP13.57□□□□□ -0.24
RPAIN-215ENST00000575112 TRIM26Q12899 539 aaPredicted RBP13.54□□□□□ -0.24
RPAIN-215ENST00000575112 SCAF1Q9H7N4 1312 aaKnown RBP13.54□□□□□ -0.24
RPAIN-215ENST00000575112 DCAF1Q9Y4B6 1507 aa13.54□□□□□ -0.24
RPAIN-215ENST00000575112 ABCC9O60706 1549 aa13.51□□□□□ -0.25
RPAIN-215ENST00000575112 PABPN1Q86U42 306 aaKnown RBP eCLIP13.38□□□□□ -0.27
RPAIN-215ENST00000575112 CCDC180Q9P1Z9 1646 aa13.36□□□□□ -0.27
RPAIN-215ENST00000575112 UBTFP17480 764 aaKnown RBP13.26□□□□□ -0.29
RPAIN-215ENST00000575112 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.25□□□□□ -0.29
RPAIN-215ENST00000575112 SCRIBQ14160 1630 aa13.24□□□□□ -0.29
RPAIN-215ENST00000575112 NEUROD1Q13562 356 aa13.22□□□□□ -0.29
RPAIN-215ENST00000575112 CCER1Q8TC90 406 aaPredicted RBP13.21□□□□□ -0.3
RPAIN-215ENST00000575112 ZEB1P37275 1124 aaPredicted RBP13.17□□□□□ -0.3
RPAIN-215ENST00000575112 PELP1Q8IZL8 1130 aaKnown RBP13.15□□□□□ -0.3
RPAIN-215ENST00000575112 GTF3C3Q9Y5Q9 886 aa13.1□□□□□ -0.31
RPAIN-215ENST00000575112 ACIN1Q9UKV3 1341 aaKnown RBP13.1□□□□□ -0.31
RPAIN-215ENST00000575112 RB1CC1Q8TDY2 1594 aa13.09□□□□□ -0.31
RPAIN-215ENST00000575112 RSF1Q96T23 1441 aaPredicted RBP13.08□□□□□ -0.32
RPAIN-215ENST00000575112 HNRNPUL2Q1KMD3 747 aaKnown RBP13.05□□□□□ -0.32
RPAIN-215ENST00000575112 YTHDC1Q96MU7 727 aaKnown RBP13.01□□□□□ -0.33
RPAIN-215ENST00000575112 CECR2Q9BXF3 1484 aa13□□□□□ -0.33
RPAIN-215ENST00000575112 DIEXFQ68CQ4 756 aaKnown RBP12.99□□□□□ -0.33
RPAIN-215ENST00000575112 APLP2Q06481 763 aa12.99□□□□□ -0.33
RPAIN-215ENST00000575112 ATP1B4Q9UN42 357 aaPredicted RBP12.98□□□□□ -0.33
RPAIN-215ENST00000575112 ITGAEP38570 1179 aa12.95□□□□□ -0.34
RPAIN-215ENST00000575112 CENPBP07199 599 aaPredicted RBP12.81□□□□□ -0.36
RPAIN-215ENST00000575112 MROH2BQ7Z745 1585 aa12.78□□□□□ -0.36
RPAIN-215ENST00000575112 MIER1Q8N108 512 aa12.78□□□□□ -0.36
RPAIN-215ENST00000575112 CSRNP3Q8WYN3 585 aa12.77□□□□□ -0.36
RPAIN-215ENST00000575112 WIZO95785 1651 aa12.76□□□□□ -0.37
RPAIN-215ENST00000575112 ABCC8Q09428 1581 aa12.71□□□□□ -0.37
RPAIN-215ENST00000575112 ZNF316A6NFI3 1004 aaPredicted RBP12.7□□□□□ -0.38
RPAIN-215ENST00000575112 P3H3Q8IVL6 736 aa12.7□□□□□ -0.38
RPAIN-215ENST00000575112 CCDC88BA6NC98 1476 aa12.68□□□□□ -0.38
RPAIN-215ENST00000575112 SOGA1O94964 1423 aa12.66□□□□□ -0.38
RPAIN-215ENST00000575112 RUSC2Q8N2Y8 1516 aa12.66□□□□□ -0.38
RPAIN-215ENST00000575112 CEP162Q5TB80 1403 aa12.65□□□□□ -0.39
RPAIN-215ENST00000575112 ARID3CA6NKF2 412 aa12.58□□□□□ -0.4
RPAIN-215ENST00000575112 CNGB1Q14028 1251 aaPredicted RBP12.56□□□□□ -0.4
RPAIN-215ENST00000575112 EIF4G1Q04637 1599 aaKnown RBP12.54□□□□□ -0.4
RPAIN-215ENST00000575112 FAM50AQ14320 339 aaKnown RBP12.52□□□□□ -0.41
RPAIN-215ENST00000575112 WRNQ14191 1432 aaPredicted RBP eCLIP12.51□□□□□ -0.41
RPAIN-215ENST00000575112 NACADO15069 1562 aa12.5□□□□□ -0.41
RPAIN-215ENST00000575112 KCNH8Q96L42 1107 aa12.47□□□□□ -0.41
RPAIN-215ENST00000575112 HIRIP3Q9BW71 556 aaPredicted RBP12.46□□□□□ -0.42
RPAIN-215ENST00000575112 TNIKQ9UKE5 1360 aa12.46□□□□□ -0.42
RPAIN-215ENST00000575112 BAZ1AQ9NRL2 1556 aaPredicted RBP12.45□□□□□ -0.42
RPAIN-215ENST00000575112 SUPT16HQ9Y5B9 1047 aaKnown RBP12.45□□□□□ -0.42
RPAIN-215ENST00000575112 MYT1Q01538 1121 aa12.44□□□□□ -0.42
RPAIN-215ENST00000575112 BCANQ96GW7 911 aa12.41□□□□□ -0.42
RPAIN-215ENST00000575112 CLIP1P30622 1438 aa12.38□□□□□ -0.43
RPAIN-215ENST00000575112 TSHZ2Q9NRE2 1034 aa12.37□□□□□ -0.43
RPAIN-215ENST00000575112 KANK4Q5T7N3 995 aaPredicted RBP12.37□□□□□ -0.43
RPAIN-215ENST00000575112 SMARCA2P51531 1590 aa12.36□□□□□ -0.43
RPAIN-215ENST00000575112 POLR3GLQ9BT43 218 aa12.32□□□□□ -0.44
RPAIN-215ENST00000575112 GOLGA3Q08378 1498 aa12.31□□□□□ -0.44
RPAIN-215ENST00000575112 TOP2AP11388 1531 aaKnown RBP12.31□□□□□ -0.44
RPAIN-215ENST00000575112 BAZ1BQ9UIG0 1483 aaKnown RBP12.29□□□□□ -0.44
RPAIN-215ENST00000575112 RAPGEF2Q9Y4G8 1499 aa12.27□□□□□ -0.45
RPAIN-215ENST00000575112 DHX57Q6P158 1386 aaKnown RBP12.26□□□□□ -0.45
RPAIN-215ENST00000575112 FBLN2P98095 1184 aa12.25□□□□□ -0.45
RPAIN-215ENST00000575112 CHIC2Q9UKJ5 165 aa12.25□□□□□ -0.45
RPAIN-215ENST00000575112 UNC13AQ9UPW8 1703 aa12.25□□□□□ -0.45
RPAIN-215ENST00000575112 SMARCA4P51532 1647 aa12.25□□□□□ -0.45
RPAIN-215ENST00000575112 DDX10Q13206 875 aaKnown RBP12.24□□□□□ -0.45
RPAIN-215ENST00000575112 SIN3AQ96ST3 1273 aa12.24□□□□□ -0.45
RPAIN-215ENST00000575112 SYNJ1O43426 1573 aa12.23□□□□□ -0.45
RPAIN-215ENST00000575112 SENP3-EIF4A1A0A087X0R7 540 aa12.23□□□□□ -0.45
RPAIN-215ENST00000575112 TRIM52Q96A61 297 aa12.23□□□□□ -0.45
RPAIN-215ENST00000575112 VPS8Q8N3P4 1428 aa12.22□□□□□ -0.45
RPAIN-215ENST00000575112 ANP32EQ9BTT0 268 aa12.21□□□□□ -0.45
RPAIN-215ENST00000575112 FKBP8Q14318 412 aa12.19□□□□□ -0.46
RPAIN-215ENST00000575112 BCL11AQ9H165 835 aa12.18□□□□□ -0.46
RPAIN-215ENST00000575112 KIF21BO75037 1637 aa12.17□□□□□ -0.46
RPAIN-215ENST00000575112 EEA1Q15075 1411 aa12.17□□□□□ -0.46
RPAIN-215ENST00000575112 CEP164Q9UPV0 1460 aa12.17□□□□□ -0.46
RPAIN-215ENST00000575112 ZNF326Q5BKZ1 582 aaKnown RBP12.17□□□□□ -0.46
RPAIN-215ENST00000575112 ATAD2BQ9ULI0 1458 aa12.14□□□□□ -0.47
RPAIN-215ENST00000575112 RRP7BPQ9NSQ0 103 aa12.11□□□□□ -0.47
RPAIN-215ENST00000575112 DNAJC5BQ9UF47 199 aa12.11□□□□□ -0.47
RPAIN-215ENST00000575112 ZNF777Q9ULD5 760 aaPredicted RBP12.11□□□□□ -0.47
RPAIN-215ENST00000575112 IRX6P78412 446 aaPredicted RBP12.08□□□□□ -0.48
RPAIN-215ENST00000575112 RBM19Q9Y4C8 960 aaKnown RBP12.08□□□□□ -0.48
RPAIN-215ENST00000575112 CUX2O14529 1486 aa12.07□□□□□ -0.48
RPAIN-215ENST00000575112 ARAP1Q96P48 1450 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 121.5 ms