RNA–Protein interactions for RNA: ENST00000567869.1

HERC2-209, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 2, humanhuman

TSL 2

Gene HERC2, Length 3,523 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC2-209ENST00000567869 NISCHQ9Y2I1 1504 aa17.48■□□□□ 0.39
HERC2-209ENST00000567869 PELP1Q8IZL8 1130 aaKnown RBP15.49■□□□□ 0.07
HERC2-209ENST00000567869 HRCP23327 699 aa15.24■□□□□ 0.03
HERC2-209ENST00000567869 MYT1Q01538 1121 aa15.04■□□□□ -0
HERC2-209ENST00000567869 CCDC180Q9P1Z9 1646 aa14.9□□□□□ -0.02
HERC2-209ENST00000567869 SHROOM4Q9ULL8 1493 aa14.87□□□□□ -0.03
HERC2-209ENST00000567869 DCAF8L2P0C7V8 631 aa14.81□□□□□ -0.04
HERC2-209ENST00000567869 PPARGC1BQ86YN6 1023 aaKnown RBP14.77□□□□□ -0.05
HERC2-209ENST00000567869 SCAF1Q9H7N4 1312 aaKnown RBP14.76□□□□□ -0.05
HERC2-209ENST00000567869 ZCCHC6Q5VYS8 1495 aaKnown RBP14.71□□□□□ -0.06
HERC2-209ENST00000567869 MYO15BQ96JP2 1530 aa14.6□□□□□ -0.07
HERC2-209ENST00000567869 SUPT5HO00267 1087 aaKnown RBP14.49□□□□□ -0.09
HERC2-209ENST00000567869 TTBK1Q5TCY1 1321 aaPredicted RBP14.41□□□□□ -0.1
HERC2-209ENST00000567869 PCGF6Q9BYE7 350 aa14.41□□□□□ -0.1
HERC2-209ENST00000567869 DCAF1Q9Y4B6 1507 aa14.27□□□□□ -0.13
HERC2-209ENST00000567869 ABCC9O60706 1549 aa14.21□□□□□ -0.13
HERC2-209ENST00000567869 ACIN1Q9UKV3 1341 aaKnown RBP14.14□□□□□ -0.15
HERC2-209ENST00000567869 NEUROD1Q13562 356 aa14.07□□□□□ -0.16
HERC2-209ENST00000567869 SCRIBQ14160 1630 aa14.04□□□□□ -0.16
HERC2-209ENST00000567869 BCL11AQ9H165 835 aa14.03□□□□□ -0.16
HERC2-209ENST00000567869 PRKCSHP14314 528 aaPredicted RBP14.02□□□□□ -0.16
HERC2-209ENST00000567869 FAM9AQ8IZU1 332 aaPredicted RBP13.98□□□□□ -0.17
HERC2-209ENST00000567869 ZEB1P37275 1124 aaPredicted RBP13.95□□□□□ -0.18
HERC2-209ENST00000567869 GTF3C3Q9Y5Q9 886 aa13.95□□□□□ -0.18
HERC2-209ENST00000567869 CHIC1Q5VXU3 224 aa13.94□□□□□ -0.18
HERC2-209ENST00000567869 TRIM26Q12899 539 aaPredicted RBP13.91□□□□□ -0.18
HERC2-209ENST00000567869 NACADO15069 1562 aa13.89□□□□□ -0.19
HERC2-209ENST00000567869 LOC105371045A0A1W2PR82 267 aa13.81□□□□□ -0.2
HERC2-209ENST00000567869 CENPBP07199 599 aaPredicted RBP13.78□□□□□ -0.2
HERC2-209ENST00000567869 RSF1Q96T23 1441 aaPredicted RBP13.76□□□□□ -0.21
HERC2-209ENST00000567869 RB1CC1Q8TDY2 1594 aa13.74□□□□□ -0.21
HERC2-209ENST00000567869 APLP2Q06481 763 aa13.72□□□□□ -0.21
HERC2-209ENST00000567869 CECR2Q9BXF3 1484 aa13.71□□□□□ -0.21
HERC2-209ENST00000567869 ANP32EQ9BTT0 268 aa13.65□□□□□ -0.22
HERC2-209ENST00000567869 EHMT2Q96KQ7 1210 aa13.61□□□□□ -0.23
HERC2-209ENST00000567869 MROH2BQ7Z745 1585 aa13.61□□□□□ -0.23
HERC2-209ENST00000567869 PABPN1Q86U42 306 aaKnown RBP eCLIP13.6□□□□□ -0.23
HERC2-209ENST00000567869 CSRNP3Q8WYN3 585 aa13.52□□□□□ -0.25
HERC2-209ENST00000567869 WIZO95785 1651 aa13.51□□□□□ -0.25
HERC2-209ENST00000567869 ERICH6Q7L0X2 663 aa13.51□□□□□ -0.25
HERC2-209ENST00000567869 UNC13AQ9UPW8 1703 aa13.5□□□□□ -0.25
HERC2-209ENST00000567869 TRIM41Q8WV44 630 aa13.46□□□□□ -0.25
HERC2-209ENST00000567869 DIEXFQ68CQ4 756 aaKnown RBP13.46□□□□□ -0.25
HERC2-209ENST00000567869 BAZ1AQ9NRL2 1556 aaPredicted RBP13.44□□□□□ -0.26
HERC2-209ENST00000567869 TSHZ2Q9NRE2 1034 aa13.39□□□□□ -0.27
HERC2-209ENST00000567869 BICRAQ9NZM4 1560 aa13.37□□□□□ -0.27
HERC2-209ENST00000567869 SMARCA4P51532 1647 aa13.35□□□□□ -0.27
HERC2-209ENST00000567869 YTHDC1Q96MU7 727 aaKnown RBP13.35□□□□□ -0.27
HERC2-209ENST00000567869 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.31□□□□□ -0.28
HERC2-209ENST00000567869 CCER1Q8TC90 406 aaPredicted RBP13.29□□□□□ -0.28
HERC2-209ENST00000567869 TOP2AP11388 1531 aaKnown RBP13.25□□□□□ -0.29
HERC2-209ENST00000567869 SUPT16HQ9Y5B9 1047 aaKnown RBP13.25□□□□□ -0.29
HERC2-209ENST00000567869 CCDC88BA6NC98 1476 aa13.24□□□□□ -0.29
HERC2-209ENST00000567869 CLSPNQ9HAW4 1339 aa13.22□□□□□ -0.29
HERC2-209ENST00000567869 SMARCA2P51531 1590 aa13.19□□□□□ -0.3
HERC2-209ENST00000567869 ABCC8Q09428 1581 aa13.14□□□□□ -0.31
HERC2-209ENST00000567869 MIER1Q8N108 512 aa13.13□□□□□ -0.31
HERC2-209ENST00000567869 EIF4G1Q04637 1599 aaKnown RBP13.12□□□□□ -0.31
HERC2-209ENST00000567869 ZNF316A6NFI3 1004 aaPredicted RBP13.12□□□□□ -0.31
HERC2-209ENST00000567869 ATAD2BQ9ULI0 1458 aa13.11□□□□□ -0.31
HERC2-209ENST00000567869 ANO8Q9HCE9 1232 aaPredicted RBP13.08□□□□□ -0.32
HERC2-209ENST00000567869 BAZ1BQ9UIG0 1483 aaKnown RBP13.07□□□□□ -0.32
HERC2-209ENST00000567869 PEG3Q9GZU2 1588 aa13.05□□□□□ -0.32
HERC2-209ENST00000567869 MSH5O43196 834 aa13.03□□□□□ -0.32
HERC2-209ENST00000567869 UBE2Q2Q8WVN8 375 aa13□□□□□ -0.33
HERC2-209ENST00000567869 SOGA1O94964 1423 aa12.98□□□□□ -0.33
HERC2-209ENST00000567869 WRNQ14191 1432 aaPredicted RBP eCLIP12.95□□□□□ -0.34
HERC2-209ENST00000567869 RUSC2Q8N2Y8 1516 aa12.94□□□□□ -0.34
HERC2-209ENST00000567869 RBM19Q9Y4C8 960 aaKnown RBP12.94□□□□□ -0.34
HERC2-209ENST00000567869 UBTFP17480 764 aaKnown RBP12.9□□□□□ -0.34
HERC2-209ENST00000567869 NCAPD3P42695 1498 aa12.88□□□□□ -0.35
HERC2-209ENST00000567869 SALL2Q9Y467 1007 aaPredicted RBP12.87□□□□□ -0.35
HERC2-209ENST00000567869 SYNJ1O43426 1573 aa12.86□□□□□ -0.35
HERC2-209ENST00000567869 ERICH6BQ5W0A0 696 aa12.83□□□□□ -0.36
HERC2-209ENST00000567869 FANCIQ9NVI1 1328 aa12.83□□□□□ -0.36
HERC2-209ENST00000567869 HMGXB3Q12766 1538 aa12.81□□□□□ -0.36
HERC2-209ENST00000567869 RANGAP1P46060 587 aaPredicted RBP12.8□□□□□ -0.36
HERC2-209ENST00000567869 MYT1LQ9UL68 1186 aa12.79□□□□□ -0.36
HERC2-209ENST00000567869 EEA1Q15075 1411 aa12.79□□□□□ -0.36
HERC2-209ENST00000567869 CEP162Q5TB80 1403 aa12.77□□□□□ -0.36
HERC2-209ENST00000567869 DEKP35659 375 aaKnown RBP12.77□□□□□ -0.36
HERC2-209ENST00000567869 TNIKQ9UKE5 1360 aa12.76□□□□□ -0.37
HERC2-209ENST00000567869 BCANQ96GW7 911 aa12.76□□□□□ -0.37
HERC2-209ENST00000567869 HNRNPUL2Q1KMD3 747 aaKnown RBP12.74□□□□□ -0.37
HERC2-209ENST00000567869 GOLGA3Q08378 1498 aa12.73□□□□□ -0.37
HERC2-209ENST00000567869 CC2D2AQ9P2K1 1620 aa12.72□□□□□ -0.37
HERC2-209ENST00000567869 CFTRP13569 1480 aa12.71□□□□□ -0.37
HERC2-209ENST00000567869 TOP2BQ02880 1626 aa12.69□□□□□ -0.38
HERC2-209ENST00000567869 CEP164Q9UPV0 1460 aa12.68□□□□□ -0.38
HERC2-209ENST00000567869 CCDC136Q96JN2 1154 aa12.68□□□□□ -0.38
HERC2-209ENST00000567869 CUX1P39880 1505 aa12.67□□□□□ -0.38
HERC2-209ENST00000567869 RAPGEF2Q9Y4G8 1499 aa12.66□□□□□ -0.38
HERC2-209ENST00000567869 CADPSQ9ULU8 1353 aa12.66□□□□□ -0.38
HERC2-209ENST00000567869 SLC24A1O60721 1099 aa12.66□□□□□ -0.38
HERC2-209ENST00000567869 BIVM-ERCC5R4GMW8 1640 aa12.63□□□□□ -0.39
HERC2-209ENST00000567869 EIF5BO60841 1220 aaKnown RBP12.62□□□□□ -0.39
HERC2-209ENST00000567869 DNAJC5BQ9UF47 199 aa12.61□□□□□ -0.39
HERC2-209ENST00000567869 CLIP1P30622 1438 aa12.61□□□□□ -0.39
HERC2-209ENST00000567869 KIF21BO75037 1637 aa12.6□□□□□ -0.39
HERC2-209ENST00000567869 FKBP8Q14318 412 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms