RNA–Protein interactions for RNA: ENST00000567109.5

CDH13-209, Transcript of cadherin 13, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CDH13, Length 8,042 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH13-209ENST00000567109 NISCHQ9Y2I1 1504 aa11.75□□□□□ -0.53
CDH13-209ENST00000567109 DCAF8L2P0C7V8 631 aa10.66□□□□□ -0.7
CDH13-209ENST00000567109 ABCC9O60706 1549 aa10.04□□□□□ -0.8
CDH13-209ENST00000567109 MYT1Q01538 1121 aa10.02□□□□□ -0.8
CDH13-209ENST00000567109 PELP1Q8IZL8 1130 aaKnown RBP9.96□□□□□ -0.81
CDH13-209ENST00000567109 SHROOM4Q9ULL8 1493 aa9.94□□□□□ -0.82
CDH13-209ENST00000567109 FAM9AQ8IZU1 332 aaPredicted RBP9.93□□□□□ -0.82
CDH13-209ENST00000567109 SUPT5HO00267 1087 aaKnown RBP9.85□□□□□ -0.83
CDH13-209ENST00000567109 CCDC180Q9P1Z9 1646 aa9.83□□□□□ -0.84
CDH13-209ENST00000567109 ZCCHC6Q5VYS8 1495 aaKnown RBP9.81□□□□□ -0.84
CDH13-209ENST00000567109 EHMT2Q96KQ7 1210 aa9.79□□□□□ -0.84
CDH13-209ENST00000567109 APLP2Q06481 763 aa9.73□□□□□ -0.85
CDH13-209ENST00000567109 DCAF1Q9Y4B6 1507 aa9.7□□□□□ -0.86
CDH13-209ENST00000567109 PABPN1Q86U42 306 aaKnown RBP eCLIP9.65□□□□□ -0.86
CDH13-209ENST00000567109 MYO15BQ96JP2 1530 aa9.64□□□□□ -0.87
CDH13-209ENST00000567109 NACADO15069 1562 aa9.62□□□□□ -0.87
CDH13-209ENST00000567109 RB1CC1Q8TDY2 1594 aa9.61□□□□□ -0.87
CDH13-209ENST00000567109 ERICH6Q7L0X2 663 aa9.55□□□□□ -0.88
CDH13-209ENST00000567109 ZEB1P37275 1124 aaPredicted RBP9.52□□□□□ -0.89
CDH13-209ENST00000567109 ATP1B4Q9UN42 357 aaPredicted RBP9.52□□□□□ -0.89
CDH13-209ENST00000567109 CCER1Q8TC90 406 aaPredicted RBP9.47□□□□□ -0.89
CDH13-209ENST00000567109 SCRIBQ14160 1630 aa9.46□□□□□ -0.89
CDH13-209ENST00000567109 TTBK1Q5TCY1 1321 aaPredicted RBP9.44□□□□□ -0.9
CDH13-209ENST00000567109 RANGAP1P46060 587 aaPredicted RBP9.41□□□□□ -0.9
CDH13-209ENST00000567109 MYT1LQ9UL68 1186 aa9.39□□□□□ -0.91
CDH13-209ENST00000567109 TRIM41Q8WV44 630 aa9.35□□□□□ -0.91
CDH13-209ENST00000567109 CENPBP07199 599 aaPredicted RBP9.32□□□□□ -0.92
CDH13-209ENST00000567109 CHIC1Q5VXU3 224 aa9.26□□□□□ -0.93
CDH13-209ENST00000567109 RSF1Q96T23 1441 aaPredicted RBP9.24□□□□□ -0.93
CDH13-209ENST00000567109 NEFLP07196 543 aa9.2□□□□□ -0.94
CDH13-209ENST00000567109 DAXXQ9UER7 740 aaPredicted RBP9.19□□□□□ -0.94
CDH13-209ENST00000567109 PCGF6Q9BYE7 350 aa9.19□□□□□ -0.94
CDH13-209ENST00000567109 BAZ1AQ9NRL2 1556 aaPredicted RBP9.18□□□□□ -0.94
CDH13-209ENST00000567109 SLC4A1APQ9BWU0 796 aaKnown RBP9.18□□□□□ -0.94
CDH13-209ENST00000567109 BAZ1BQ9UIG0 1483 aaKnown RBP9.15□□□□□ -0.95
CDH13-209ENST00000567109 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.13□□□□□ -0.95
CDH13-209ENST00000567109 HNRNPUL2Q1KMD3 747 aaKnown RBP9.13□□□□□ -0.95
CDH13-209ENST00000567109 UBTFP17480 764 aaKnown RBP9.12□□□□□ -0.95
CDH13-209ENST00000567109 POLR3GLQ9BT43 218 aa9.12□□□□□ -0.95
CDH13-209ENST00000567109 CECR2Q9BXF3 1484 aa9.11□□□□□ -0.95
CDH13-209ENST00000567109 NCAPD3P42695 1498 aa9.07□□□□□ -0.96
CDH13-209ENST00000567109 SMARCA2P51531 1590 aa9.06□□□□□ -0.96
CDH13-209ENST00000567109 HRCP23327 699 aa9.06□□□□□ -0.96
CDH13-209ENST00000567109 ATAD2BQ9ULI0 1458 aa9.05□□□□□ -0.96
CDH13-209ENST00000567109 CADPSQ9ULU8 1353 aa9.01□□□□□ -0.97
CDH13-209ENST00000567109 PDS5BQ9NTI5 1447 aa9.01□□□□□ -0.97
CDH13-209ENST00000567109 CLSPNQ9HAW4 1339 aa9□□□□□ -0.97
CDH13-209ENST00000567109 YTHDC1Q96MU7 727 aaKnown RBP9□□□□□ -0.97
CDH13-209ENST00000567109 CSRNP3Q8WYN3 585 aa8.99□□□□□ -0.97
CDH13-209ENST00000567109 SLC24A1O60721 1099 aa8.98□□□□□ -0.97
CDH13-209ENST00000567109 CNGB1Q14028 1251 aaPredicted RBP8.98□□□□□ -0.97
CDH13-209ENST00000567109 MROH2BQ7Z745 1585 aa8.97□□□□□ -0.97
CDH13-209ENST00000567109 EEA1Q15075 1411 aa8.95□□□□□ -0.98
CDH13-209ENST00000567109 WRNQ14191 1432 aaPredicted RBP eCLIP8.94□□□□□ -0.98
CDH13-209ENST00000567109 TRIM26Q12899 539 aaPredicted RBP8.94□□□□□ -0.98
CDH13-209ENST00000567109 ZNF316A6NFI3 1004 aaPredicted RBP8.92□□□□□ -0.98
CDH13-209ENST00000567109 ITGAEP38570 1179 aa8.91□□□□□ -0.98
CDH13-209ENST00000567109 TOP2AP11388 1531 aaKnown RBP8.9□□□□□ -0.99
CDH13-209ENST00000567109 BCANQ96GW7 911 aa8.9□□□□□ -0.99
CDH13-209ENST00000567109 ERCC6Q03468 1493 aa8.89□□□□□ -0.99
CDH13-209ENST00000567109 ZBTB47Q9UFB7 747 aaPredicted RBP8.87□□□□□ -0.99
CDH13-209ENST00000567109 FBLN2P98095 1184 aa8.87□□□□□ -0.99
CDH13-209ENST00000567109 CCDC88BA6NC98 1476 aa8.85□□□□□ -0.99
CDH13-209ENST00000567109 KIF27Q86VH2 1401 aa8.83□□□□□ -1
CDH13-209ENST00000567109 EIF4G1Q04637 1599 aaKnown RBP8.83□□□□□ -1
CDH13-209ENST00000567109 HMGXB3Q12766 1538 aa8.83□□□□□ -1
CDH13-209ENST00000567109 CHMP7Q8WUX9 453 aaPredicted RBP8.82□□□□□ -1
CDH13-209ENST00000567109 CEP164Q9UPV0 1460 aa8.8□□□□□ -1
CDH13-209ENST00000567109 ABCC8Q09428 1581 aa8.8□□□□□ -1
CDH13-209ENST00000567109 PPARGC1BQ86YN6 1023 aaKnown RBP8.8□□□□□ -1
CDH13-209ENST00000567109 BCL11AQ9H165 835 aa8.8□□□□□ -1
CDH13-209ENST00000567109 SMARCA4P51532 1647 aa8.79□□□□□ -1
CDH13-209ENST00000567109 CDK11AQ9UQ88 783 aaPredicted RBP8.79□□□□□ -1
CDH13-209ENST00000567109 BICRAQ9NZM4 1560 aa8.77□□□□□ -1.01
CDH13-209ENST00000567109 NPM1P06748 294 aaKnown RBP eCLIP8.76□□□□□ -1.01
CDH13-209ENST00000567109 CFTRP13569 1480 aa8.75□□□□□ -1.01
CDH13-209ENST00000567109 FANCD2Q9BXW9 1451 aa8.74□□□□□ -1.01
CDH13-209ENST00000567109 NEFMP07197 916 aa8.73□□□□□ -1.01
CDH13-209ENST00000567109 PLPPR3Q6T4P5 718 aa8.73□□□□□ -1.01
CDH13-209ENST00000567109 DNAJC5BQ9UF47 199 aa8.73□□□□□ -1.01
CDH13-209ENST00000567109 SOGA1O94964 1423 aa8.73□□□□□ -1.01
CDH13-209ENST00000567109 RTL5Q5HYW3 569 aaPredicted RBP8.72□□□□□ -1.01
CDH13-209ENST00000567109 ESF1Q9H501 851 aaKnown RBP8.71□□□□□ -1.02
CDH13-209ENST00000567109 CUX2O14529 1486 aa8.71□□□□□ -1.02
CDH13-209ENST00000567109 CARMIL1Q5VZK9 1371 aa8.7□□□□□ -1.02
CDH13-209ENST00000567109 GOLGA3Q08378 1498 aa8.69□□□□□ -1.02
CDH13-209ENST00000567109 TNIKQ9UKE5 1360 aa8.68□□□□□ -1.02
CDH13-209ENST00000567109 CANXP27824 592 aaKnown RBP8.67□□□□□ -1.02
CDH13-209ENST00000567109 TDRD9Q8NDG6 1382 aaKnown RBP8.67□□□□□ -1.02
CDH13-209ENST00000567109 LOC105371045A0A1W2PR82 267 aa8.67□□□□□ -1.02
CDH13-209ENST00000567109 TRIM52Q96A61 297 aa8.67□□□□□ -1.02
CDH13-209ENST00000567109 FAM50AQ14320 339 aaKnown RBP8.66□□□□□ -1.02
CDH13-209ENST00000567109 MRC2Q9UBG0 1479 aa8.66□□□□□ -1.02
CDH13-209ENST00000567109 PEG3Q9GZU2 1588 aa8.63□□□□□ -1.03
CDH13-209ENST00000567109 IFT140Q96RY7 1462 aa8.63□□□□□ -1.03
CDH13-209ENST00000567109 CLIP1P30622 1438 aa8.62□□□□□ -1.03
CDH13-209ENST00000567109 A0A0G2JS52 829 aa8.62□□□□□ -1.03
CDH13-209ENST00000567109 SCAF1Q9H7N4 1312 aaKnown RBP8.62□□□□□ -1.03
CDH13-209ENST00000567109 CARMIL2Q6F5E8 1435 aa8.62□□□□□ -1.03
CDH13-209ENST00000567109 STAG3Q9UJ98 1225 aa8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 408 ms